Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0967.Seq
         (730 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    27   0.24 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.97 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.97 
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    24   1.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   2.2  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   2.2  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   2.2  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   2.9  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.8  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 26.6 bits (56), Expect = 0.24
 Identities = 9/27 (33%), Positives = 20/27 (74%)
 Frame = +3

Query: 450 DKIHDEVKRLVMLCTCRQKFACSRSEK 530
           +K+H+E ++L+   T R++++CSR  +
Sbjct: 253 EKLHNEKEKLLEERTSRKRYSCSRERE 279


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.6 bits (51), Expect = 0.97
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
 Frame = -2

Query: 633 NSSSATQPPPTLTMTVEXXXXXXXRVWESPNLYFPSPTWNTRTSVGTCRAS-RVASPRRE 457
           NSS+    P   +++V+         WE P   +P+  W  R S    R   R     R 
Sbjct: 548 NSSARDSSPAIESISVDSGSINTVAEWEPPRALWPT-EWKVRPSTVEEREEFRRQERMRY 606

Query: 456 FCPHRS 439
             PH++
Sbjct: 607 AAPHKA 612


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 24.6 bits (51), Expect = 0.97
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 219  LLVVHKLEEPLPPVVPAKV 163
            L+++H+   PLPP +P +V
Sbjct: 1100 LVMIHEENAPLPPALPPQV 1118


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 237 QICQAGLLVVHKLEEPLPPVVP 172
           ++ +AG     K +EPLPPV P
Sbjct: 28  ELFKAGSAEQPKEQEPLPPVTP 49


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 13/51 (25%), Positives = 21/51 (41%)
 Frame = +2

Query: 14  GKQRCRAGVQVAPREAAVGPVAQRVADHPGSARXSCTSASPISRNFSASPT 166
           G +    GV++     +   +      +PG    S + +SP S   S SPT
Sbjct: 56  GPEESSGGVELGWFNDSAAAITSTSPSYPGGGSSSPSPSSPSSFFSSVSPT 106


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 319 HPGWRWAPWRICSTGTVAA 375
           +P W WA ++ CS G V+A
Sbjct: 111 YPDWSWANYKDCS-GIVSA 128


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 319 HPGWRWAPWRICSTGTVAA 375
           +P W WA ++ CS G V+A
Sbjct: 111 YPDWSWANYKDCS-GIVSA 128


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 213 VVHKLEEPLPPVVPAKVGD 157
           V   L+EPLPP  P + G+
Sbjct: 367 VTFDLDEPLPPPPPIRGGE 385


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 375 GRYRSCRTDPPRRPSPAGMCRI 310
           GR +   T PP  P+PA   R+
Sbjct: 375 GRSQKSTTGPPPGPTPAQKARM 396


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,492
Number of Sequences: 438
Number of extensions: 4719
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)