Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0965.Seq
         (470 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    22   2.5  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   3.3  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    21   4.3  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   5.7  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   7.6  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   7.6  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   7.6  

>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 85  CQESGGFIIIPHPRG 129
           C++ GGF++I  P G
Sbjct: 109 CEQLGGFLLILTPNG 123


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 319 RSTKFLPAHSVLPDSFVQ 372
           RS + LPAH V    FVQ
Sbjct: 336 RSRRHLPAHLVAGTCFVQ 353


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -2

Query: 391 TPEPSPFEQMSQEELNAQAKTLLSAAGYGPQ 299
           TPEP P +    E   A  +   S+    PQ
Sbjct: 398 TPEPQPTQTTESEPTQASEQPTESSTTQKPQ 428


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +2

Query: 2   SVDAWARTLSYAGLLKREIFPECVDVNNVRKVEGSL*SPTHEARITSKL 148
           +VDA  + +   G++KRE  P    +   +K +G++        I SK+
Sbjct: 320 AVDATIQEMLDLGVIKREASPYASPMTVGKKKDGTVRICLDARMINSKM 368


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +3

Query: 105 HYNPPPTRRG*HQNCRCYGYRY 170
           H N     +G H N   YGY Y
Sbjct: 374 HQNYVQGYQGEHPNYNHYGYHY 395


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -2

Query: 382 PSPFEQMSQEELNAQAKTLLSAAGYGP 302
           P+P E  +   ++  A   L   GYGP
Sbjct: 10  PTPHESNTSTPVSKSAFIELQQHGYGP 36


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +3

Query: 105 HYNPPPTRRG*HQNCRCYGYRY 170
           H N     +G H N   YGY Y
Sbjct: 322 HQNYVQGYQGEHPNYNHYGYHY 343


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,631
Number of Sequences: 336
Number of extensions: 2614
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10931752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)