Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0965.Seq
         (470 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0198 + 23502657-23502900,23505228-23505298,23505690-235057...    29   1.4  
05_01_0431 + 3412178-3412336,3413012-3413109,3413185-3413312,341...    29   1.9  
03_05_0547 + 25432079-25432356,25432446-25432522,25432685-254328...    27   5.8  
02_04_0103 - 19768288-19768737                                         27   5.8  
03_02_0996 - 13082540-13082818,13083107-13083221,13084135-130842...    27   7.6  
02_01_0772 - 5755371-5756654,5757808-5757834                           27   7.6  
01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679...    27   7.6  

>04_04_0198 +
           23502657-23502900,23505228-23505298,23505690-23505727,
           23505905-23507693
          Length = 713

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +3

Query: 63  LNALTLIMSGKWRVHYNPPPTRRG*HQNCRCYGYRYRFSIPDFAI*HLRQG 215
           L +L   +   W +    P + R  H  CRC G++Y F     A  HL  G
Sbjct: 50  LLSLRAALPSPWPLATMAPSSSRHRHHGCRCPGFQYAFVREKAAGDHLSLG 100


>05_01_0431 + 3412178-3412336,3413012-3413109,3413185-3413312,
            3413770-3413881,3414309-3414489,3414714-3414896,
            3415133-3415315,3416062-3416131,3416413-3416522,
            3416604-3416908,3417079-3417175,3417622-3417765,
            3418217-3418303,3418387-3418473,3418566-3418706,
            3418805-3418930,3419166-3419264,3419690-3419757,
            3420275-3420341,3420713-3420883,3420959-3421048,
            3421831-3421911,3423397-3423470,3423784-3423855,
            3423925-3424017,3424138-3424204
          Length = 1030

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +2

Query: 221  FHIDATAIAIFYGFLKCYTKASVQRFLRTITSCAQ 325
            +H D   I IF+  LK ++  + ++FL+ +T C++
Sbjct: 927  YHPDHELIDIFWEVLKSFSSHNQKKFLKFVTGCSR 961


>03_05_0547 +
           25432079-25432356,25432446-25432522,25432685-25432819,
           25433516-25433570,25433696-25433783,25435040-25435138,
           25435227-25435358
          Length = 287

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 252 KIAIAVASMWKKNLGVDVKLQNQEWK 175
           +I +AVAS W K++ +  K+  Q WK
Sbjct: 186 EILVAVASGWDKHVDIINKITPQNWK 211


>02_04_0103 - 19768288-19768737
          Length = 149

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -2

Query: 430 PAWHFTPDVTAGFTPEPSP 374
           P WH   DV A  T EPSP
Sbjct: 70  PTWHAREDVAAAATWEPSP 88


>03_02_0996 -
           13082540-13082818,13083107-13083221,13084135-13084235,
           13084890-13085117,13085789-13086106,13086200-13086484,
           13086566-13086913
          Length = 557

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +2

Query: 5   VDAWARTLSYAGLLK-REIFPECVDVNNVRKVEGSL*SPTHEARITSKLP 151
           VD W+     A LL  R I P   +V  + K+     SPT E    SKLP
Sbjct: 293 VDLWSAGCILAELLAGRPIMPGRTEVEQLHKIFKLCGSPTEEYWKKSKLP 342


>02_01_0772 - 5755371-5756654,5757808-5757834
          Length = 436

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +3

Query: 333 FACAFSSS*LICSNGEGSGVNPAVTSGVKCHAGFSPVPNTFSVI 464
           F C    + L  + GEG GV      G++    F P  N +S +
Sbjct: 218 FGCCVMGNRLYVAGGEGCGVGGGGGGGLRSVEVFDPAKNRWSFV 261


>01_06_1660 +
           38966999-38967001,38967685-38967757,38967841-38967923,
           38968042-38968168,38968260-38968339,38968428-38968544,
           38968711-38968845,38969046-38969215,38969300-38969417
          Length = 301

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 265 EVLYKSVSSAVFADHNQLRSTKFLPA 342
           E LYK V +A+ AD    +STK  PA
Sbjct: 234 EALYKKVHAAIRADPTMAKSTKKEPA 259


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,562,894
Number of Sequences: 37544
Number of extensions: 287808
Number of successful extensions: 642
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)