Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0965.Seq
         (470 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF117907-1|AAD30863.1| 1956|Homo sapiens tetrodotoxin-resistant ...    30   3.5  
AL592294-1|CAI21483.1| 1185|Homo sapiens zinc finger, SWIM-type ...    29   6.1  
AL359473-7|CAI16443.1| 1185|Homo sapiens zinc finger, SWIM-type ...    29   6.1  
AK024452-1|BAB15742.1| 1051|Homo sapiens FLJ00044 protein protein.     29   6.1  
AB040944-1|BAA96035.1| 1253|Homo sapiens KIAA1511 protein protein.     29   6.1  

>AF117907-1|AAD30863.1| 1956|Homo sapiens tetrodotoxin-resistant
            voltage-gated sodium channel protein.
          Length = 1956

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 277  CITLQKTIKNCDCCSIDVEKEPW 209
            C T +  I++C CC +D  K PW
Sbjct: 1114 CFT-EGCIRHCPCCKLDTTKSPW 1135


>AL592294-1|CAI21483.1| 1185|Homo sapiens zinc finger, SWIM-type
           containing 5 protein.
          Length = 1185

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -2

Query: 412 PDVTAGFTPEPSPFEQMSQEELNAQAKTLLSAAGY-GPQKPLN*RF 278
           PD TAG + +      + +E++  Q K  LS  GY G  K LN  F
Sbjct: 320 PDPTAGASIDDENCWHLDEEQVKEQVKLFLSQGGYCGSGKQLNSMF 365


>AL359473-7|CAI16443.1| 1185|Homo sapiens zinc finger, SWIM-type
           containing 5 protein.
          Length = 1185

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -2

Query: 412 PDVTAGFTPEPSPFEQMSQEELNAQAKTLLSAAGY-GPQKPLN*RF 278
           PD TAG + +      + +E++  Q K  LS  GY G  K LN  F
Sbjct: 320 PDPTAGASIDDENCWHLDEEQVKEQVKLFLSQGGYCGSGKQLNSMF 365


>AK024452-1|BAB15742.1| 1051|Homo sapiens FLJ00044 protein protein.
          Length = 1051

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = -2

Query: 469 RLMTEKVLGTGEKPAWHFTPDVTAGFTPEPSPFEQMSQEELNAQAKTLLSAAGY 308
           RL  E +L   E    +  PD TAG   E +    + +E++  Q K LLS  GY
Sbjct: 283 RLADEILLLGSEINLVNGAPDPTAGAGIEDANCWHLDEEQIQEQVKQLLSNGGY 336


>AB040944-1|BAA96035.1| 1253|Homo sapiens KIAA1511 protein protein.
          Length = 1253

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -2

Query: 412 PDVTAGFTPEPSPFEQMSQEELNAQAKTLLSAAGY-GPQKPLN*RF 278
           PD TAG + +      + +E++  Q K  LS  GY G  K LN  F
Sbjct: 388 PDPTAGASIDDENCWHLDEEQVKEQVKLFLSQGGYCGSGKQLNSMF 433


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,131,431
Number of Sequences: 237096
Number of extensions: 1591425
Number of successful extensions: 2931
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2931
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4099895856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)