Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0964.Seq
(699 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 78 1e-15
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 51 2e-07
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 49 6e-07
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 43 4e-05
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 40 3e-04
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 39 6e-04
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 39 8e-04
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 37 0.002
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 37 0.002
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 37 0.003
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 33 0.039
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 33 0.052
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 33 0.052
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 31 0.21
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 29 0.85
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 29 0.85
SPAC4D7.06c |||siroheme synthase |Schizosaccharomyces pombe|chr ... 28 1.1
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 27 2.0
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|... 27 3.4
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 27 3.4
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S... 26 4.5
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||... 26 4.5
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 26 4.5
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 6.0
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 26 6.0
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak... 25 7.9
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 78.2 bits (184), Expect = 1e-15
Identities = 37/70 (52%), Positives = 49/70 (70%)
Frame = -3
Query: 697 PDEKSREAILRANLRKSPIAKDVDLSYIAKVTQGFSGADLTEICQRACKLAIRQAIEAEI 518
PDE++R +IL+ LR +P+A+DVDL +AK T GFSGADL + QRA KLAI+ +IE +I
Sbjct: 667 PDEEARFSILQTQLRHTPVAEDVDLRAVAKATHGFSGADLEFVVQRAVKLAIKDSIEEDI 726
Query: 517 HREGVASSKP 488
RE P
Sbjct: 727 KRENETGEAP 736
Score = 54.0 bits (124), Expect = 2e-08
Identities = 26/47 (55%), Positives = 33/47 (70%)
Frame = -1
Query: 453 VPEISRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRGFGTNFRF 313
V ++ R H EEAMK ARRSVSD ++R+YE +A L SRG T F+F
Sbjct: 748 VSQVQRHHVEEAMKMARRSVSDAEVRRYEAYAHQLLTSRGL-TGFQF 793
Score = 46.8 bits (106), Expect = 3e-06
Identities = 22/57 (38%), Positives = 31/57 (54%)
Frame = -3
Query: 697 PDEKSREAILRANLRKSPIAKDVDLSYIAKVTQGFSGADLTEICQRACKLAIRQAIE 527
PD R ILR + + +A DVDL IA T G+ G+DL +C A IR+ ++
Sbjct: 392 PDPTGRLEILRIHTKNMKLADDVDLEQIAAETHGYVGSDLASLCSEAAMQQIREKMD 448
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 50.8 bits (116), Expect = 2e-07
Identities = 27/63 (42%), Positives = 36/63 (57%)
Frame = -3
Query: 697 PDEKSREAILRANLRKSPIAKDVDLSYIAKVTQGFSGADLTEICQRACKLAIRQAIEAEI 518
PD + R AIL + R P+ KDVDLS IA+ T GF+GADL + +A A + A
Sbjct: 438 PDVRGRLAILLQHTRHVPLGKDVDLSIIARGTSGFAGADLANLINQAAVYASKNLSTAVS 497
Query: 517 HRE 509
R+
Sbjct: 498 MRD 500
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 49.2 bits (112), Expect = 6e-07
Identities = 22/59 (37%), Positives = 39/59 (66%)
Frame = -3
Query: 697 PDEKSREAILRANLRKSPIAKDVDLSYIAKVTQGFSGADLTEICQRACKLAIRQAIEAE 521
P+ ++R+ I++ K A+DVDL IA+ T+G SGA++ +CQ A +A+ + +EA+
Sbjct: 714 PNFEARKQIVKIQAEKMKFAEDVDLDLIAEKTEGCSGAEVVALCQEAGLIAMHEDLEAK 772
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 43.2 bits (97), Expect = 4e-05
Identities = 22/63 (34%), Positives = 38/63 (60%)
Frame = -3
Query: 697 PDEKSREAILRANLRKSPIAKDVDLSYIAKVTQGFSGADLTEICQRACKLAIRQAIEAEI 518
P+E++R ILR + RK I D++ +A+ T ++GA L +C A +A+RQ + +I
Sbjct: 356 PNEEARVGILRIHSRKMAIDDDINWEELARSTDEYNGAMLKSVCVEAGMIALRQG-DTKI 414
Query: 517 HRE 509
+ E
Sbjct: 415 NHE 417
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 39.9 bits (89), Expect = 3e-04
Identities = 19/54 (35%), Positives = 30/54 (55%)
Frame = -3
Query: 697 PDEKSREAILRANLRKSPIAKDVDLSYIAKVTQGFSGADLTEICQRACKLAIRQ 536
P ++R ILR + R + + +DL IA+ G SGA+L +C A A+R+
Sbjct: 317 PSAEARAEILRIHSRSMNLTRGIDLKSIAEKMNGASGAELKGVCTEAGMFALRE 370
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 39.1 bits (87), Expect = 6e-04
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = -3
Query: 697 PDEKSREAILRANLRKSPIAKDVDL--SYIAKVTQGFSGADLTEICQRACKLAIR 539
PD RE I + +L+ A ++DL +A +T GF+GAD+ +C +A R
Sbjct: 467 PDIGGREQIFKVHLKHIKAADNIDLIAKRLAVLTSGFTGADIMNVCNEGALIAAR 521
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 38.7 bits (86), Expect = 8e-04
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Frame = -3
Query: 697 PDEKSREAILRANLRKSPIAKDVDLSYIAKVTQ--GFSGADLTEICQRACKLAIRQAIEA 524
PD R IL+ +++P+ ++V+L + + + FSGADL + + A A+R A+ A
Sbjct: 660 PDAHERVEILKTLTKQTPLHEEVNLDVLGRDERCSNFSGADLAALVREAAVTALRSAVFA 719
Query: 523 EI 518
+I
Sbjct: 720 DI 721
Score = 37.5 bits (83), Expect = 0.002
Identities = 19/54 (35%), Positives = 30/54 (55%)
Frame = -3
Query: 697 PDEKSREAILRANLRKSPIAKDVDLSYIAKVTQGFSGADLTEICQRACKLAIRQ 536
P + +RE ILR + ++ D D +AK T G+ GADL + A +AI++
Sbjct: 346 PSQDAREKILRTMAKGLKLSGDFDFRQLAKQTPGYVGADLKALTAAAGIIAIKR 399
Score = 29.1 bits (62), Expect = 0.64
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -1
Query: 471 HGRGRPVPEISRAHFEEAMKFARRSVSDNDIRKYEMFAQ 355
H P+ ++ A FE A K + SVSD D +KY+ A+
Sbjct: 731 HSALEPI-RVTNADFELAFKNIKPSVSDRDRQKYQRLAK 768
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 37.1 bits (82), Expect = 0.002
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = -3
Query: 697 PDEKSREAILRANLRKSPIAKDVDLSYIAKVTQGFSGADLTEICQRACKLAIR 539
PD + R ILR + + I KD+ IA++ +GA+L +C A AIR
Sbjct: 350 PDLEGRAHILRIHAKSMAIDKDIRWELIARLCPSQTGAELRSVCTEAGMFAIR 402
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 37.1 bits (82), Expect = 0.002
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = -3
Query: 697 PDEKSREAILRAN-LRKSPIAKDVDLSYIAKVTQGFSGADLTEICQRACKLAIRQ 536
P++++R IL N L SP + L ++A+ T G+ GADL +C A A+R+
Sbjct: 545 PNKQARMKILEINSLHFSPKIPESYLLHLAESTSGYGGADLKALCTEAALNAVRR 599
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 36.7 bits (81), Expect = 0.003
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = -3
Query: 697 PDEKSREAILRANLRKSPIAKDVDLSYIAKVTQGFSGADLTEICQRACKLAIRQ 536
P+E R IL+ +L K ++D + K+T G +GADL + A +AI++
Sbjct: 303 PNEVGRMEILKIHLEKVSKQGEIDYEALVKLTDGTNGADLRNVVTEAGFIAIKE 356
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 33.1 bits (72), Expect = 0.039
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = -3
Query: 697 PDEKSREAILRANLRKSPIAKDVDLSYIAKVTQGFSGADLTEICQRACKLAIRQ 536
PDE ++ I + K + +DV+L + + SGA++ I A LA+R+
Sbjct: 363 PDEATKRKIFTIHTSKMNLGEDVNLEELIQCKDDLSGAEIKAIVSEAGLLALRE 416
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 32.7 bits (71), Expect = 0.052
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = -3
Query: 697 PDEKSREAILRANLRKSP----IAKDVDLSYIAKVTQGFSGADLTEICQRACKLAIRQAI 530
PDE R IL+ + + + DVD+ +A +T+ FSGA++ + + A A + I
Sbjct: 449 PDEHGRLQILKIHTSRMASNGILENDVDMEELASLTKNFSGAEIAGLIKSASSFAFYRHI 508
Query: 529 E 527
+
Sbjct: 509 K 509
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 32.7 bits (71), Expect = 0.052
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = -3
Query: 691 EKSREAILRANLRKSPIAKDVDLSYIAK-VTQGFSGADLTEICQRACKLAIRQ 536
E+S+ ++LRA + + + +DL+ IAK F+GAD+ +C A AI++
Sbjct: 829 EESKASMLRALTKTFKLDETIDLNEIAKNCHPNFTGADMYALCSDAVLSAIKR 881
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 30.7 bits (66), Expect = 0.21
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = -3
Query: 697 PDEKSREAILRANLRKSPIA-KDVDLSYIAKVTQGFSGADLTEICQRACKLAIRQAIEAE 521
P+ +R + N+ K P D +AK+T G+SG+D++ + + A +R+ I
Sbjct: 295 PNAHARARMFELNVGKIPSELTSQDFKELAKMTDGYSGSDISIVVRDAIMEPVRR-IHTA 353
Query: 520 IHREGVASSK 491
H + V +K
Sbjct: 354 THFKEVYDNK 363
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 28.7 bits (61), Expect = 0.85
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = -3
Query: 697 PDEKSREAILRANLRKSPIAKDV-DLSYIAKVTQGFSGADLTEICQRACKLAIRQAIEA 524
PDE +R L L+ + + D+ I K T+ +SG+DLT + + A +R E+
Sbjct: 635 PDETTRRLHLNNLLKYQKHSLSLEDIEAIVKATEYYSGSDLTALAKDAAMGPLRSLGES 693
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 28.7 bits (61), Expect = 0.85
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 453 VPEISRAHFEEAMKFARRSVSDNDIRKYE 367
+P IS HF+ +++ R SVS I +YE
Sbjct: 622 IPPISLNHFKASLRTIRPSVSQEGIHRYE 650
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = -3
Query: 628 DLSYIAKVTQGFSGADLTEICQRACKLAIRQAIEAEIHREGVASSKPPLPL 476
DL + +T+G+SG+D+T + + A +R +A + A PP+ L
Sbjct: 579 DLEELVNLTEGYSGSDITALAKDAAMGPLRNLGDALLTTS--AEMIPPISL 627
>SPAC4D7.06c |||siroheme synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 264
Score = 28.3 bits (60), Expect = 1.1
Identities = 9/35 (25%), Positives = 18/35 (51%)
Frame = +3
Query: 462 LVHVHNGSGGLLLATPSRWISASMAWRMASLQARW 566
++HV N +++ +P + +AWR+ Q W
Sbjct: 38 ILHVLNADAHVIVVSPKAGLCKEVAWRIQEKQVEW 72
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = -3
Query: 694 DEKSREAILRANLRKSPIAKDVDLSYIAKVTQGFSGADLTEICQRACKLAIRQA 533
D + R + + K ++ +VDL SGA + I Q A LA+R++
Sbjct: 307 DRRQRRLVFQTITAKMLLSPEVDLDTFIMRPDASSGAQIAAIMQDAGLLAVRKS 360
>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
2|||Manual
Length = 643
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -3
Query: 256 VQEEGGDDDLYI*TVSRSRPRGISTISIDQN*RP 155
+++ GG D+LYI T+S+ R + +Q +P
Sbjct: 225 IKDSGGRDNLYIQTISKPRRSYVQNNKSEQTIKP 258
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +3
Query: 492 LLLATPSRWISASMAWR-MASLQ 557
L+ TPS+W S S WR M S+Q
Sbjct: 1462 LIFCTPSQWDSLSKRWRSMRSIQ 1484
>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1206
Score = 26.2 bits (55), Expect = 4.5
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = -3
Query: 580 LTEICQRACKLAIRQAIEAEIHREGVASSKPPLPLWTWTRKTRSGD 443
L +C R ++RQ E VAS P P+ WT K D
Sbjct: 448 LYTVCGRGSNSSLRQLRRGLETTEIVASELPGAPIAIWTLKLNQTD 493
>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 393
Score = 26.2 bits (55), Expect = 4.5
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = -2
Query: 209 SLATSGHLHHLDRPELTSCLFVLRVAPLHQHGAWPRPVHVCDSDA 75
SLA G L H D + V+ V+P+ H RP+HV DS A
Sbjct: 291 SLAAGGSLCHPD-------ISVMIVSPICAHSLSLRPIHVPDSMA 328
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/57 (22%), Positives = 30/57 (52%)
Frame = -3
Query: 697 PDEKSREAILRANLRKSPIAKDVDLSYIAKVTQGFSGADLTEICQRACKLAIRQAIE 527
P+E+ R +L+ + I L ++ +T G++ ADL+ + A +A+ + ++
Sbjct: 774 PNEEERLEVLQKLANRFHIENAAMLKKLSTLTDGYTYADLSSLLYDAHLIAVHKLLK 830
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -3
Query: 160 RPVCLSCVSPHYTNM 116
R CL C +PHY+NM
Sbjct: 576 RSNCLRCNAPHYSNM 590
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = -1
Query: 195 GASPPSR*TRTNVLSVCPACRP-TTPTWRLAPAG 97
G + R TN C C+ TTP WR +P G
Sbjct: 619 GDANTRRANATNPTPTCTNCQTRTTPLWRRSPDG 652
>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 708
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = -1
Query: 483 CRYGHGRGRPVPEISRAHFE-EA--MKFARRSVSDN 385
CR+ +PEI+ AHFE EA +KF +S+ N
Sbjct: 443 CRFRRNLINLLPEITVAHFEAEALDLKFVAKSLPSN 478
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,623,352
Number of Sequences: 5004
Number of extensions: 50620
Number of successful extensions: 148
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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