Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0963.Seq
         (616 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    30   0.013
AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    26   0.22 
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    26   0.22 
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    25   0.38 
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    25   0.38 
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    25   0.38 
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    25   0.38 
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    25   0.38 
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           25   0.38 
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    25   0.38 
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    25   0.38 
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    24   1.2  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          24   1.2  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    22   3.6  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    22   3.6  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   6.2  
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    21   8.2  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   8.2  

>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 30.3 bits (65), Expect = 0.013
 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -2

Query: 393 LAPSAPISS-WHEYVSPLFILTKLFGF 316
           + P A ISS +H+ + PL  LTK+FGF
Sbjct: 1   MTPHALISSDFHDVIKPLINLTKIFGF 27


>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 17/66 (25%), Positives = 35/66 (53%)
 Frame = +2

Query: 281 IADYTLPNSEEVNPKSLVKMNNGDTYSCQLLIGADGANSAVRRAMGVQYLSWNYDQMGVV 460
           +A   + NS   +P   +++NN   Y  ++L   D   + + R + VQ+  + Y  + ++
Sbjct: 91  LAFQVILNSCFCDPAKWIRLNNNLQYIDEVLKNRDSHETNLLRNVSVQF--FVYVILYIL 148

Query: 461 ATLYLA 478
           AT++LA
Sbjct: 149 ATVFLA 154


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 17/66 (25%), Positives = 35/66 (53%)
 Frame = +2

Query: 281 IADYTLPNSEEVNPKSLVKMNNGDTYSCQLLIGADGANSAVRRAMGVQYLSWNYDQMGVV 460
           +A   + NS   +P   +++NN   Y  ++L   D   + + R + VQ+  + Y  + ++
Sbjct: 91  LAFQVILNSCFCDPAKWIRLNNNLQYIDEVLKNRDSHETNLLRNVSVQF--FVYVILYIL 148

Query: 461 ATLYLA 478
           AT++LA
Sbjct: 149 ATVFLA 154


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 0.38
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -3

Query: 548 SKGRMAIGPEGSHLARQLCYPFPQLSTRWPPHPF 447
           S G     P  +      CY  PQ++ ++P HP+
Sbjct: 24  SPGTDYYNPNANSTYPPACYSPPQVAPQYPQHPY 57


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 0.38
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -3

Query: 548 SKGRMAIGPEGSHLARQLCYPFPQLSTRWPPHPF 447
           S G     P  +      CY  PQ++ ++P HP+
Sbjct: 24  SPGTDYYNPNANSTYPPACYSPPQVAPQYPQHPY 57


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 25.4 bits (53), Expect = 0.38
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -3

Query: 548 SKGRMAIGPEGSHLARQLCYPFPQLSTRWPPHPF 447
           S G     P  +      CY  PQ++ ++P HP+
Sbjct: 24  SPGTDYYNPNANSTYPPACYSPPQVAPQYPQHPY 57


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 0.38
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -3

Query: 548 SKGRMAIGPEGSHLARQLCYPFPQLSTRWPPHPF 447
           S G     P  +      CY  PQ++ ++P HP+
Sbjct: 24  SPGTDYYNPNANSTYPPACYSPPQVAPQYPQHPY 57


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 25.4 bits (53), Expect = 0.38
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -3

Query: 548 SKGRMAIGPEGSHLARQLCYPFPQLSTRWPPHPF 447
           S G     P  +      CY  PQ++ ++P HP+
Sbjct: 24  SPGTDYYNPNANSTYPPACYSPPQVAPQYPQHPY 57


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 0.38
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -3

Query: 548 SKGRMAIGPEGSHLARQLCYPFPQLSTRWPPHPF 447
           S G     P  +      CY  PQ++ ++P HP+
Sbjct: 24  SPGTDYYNPNANSTYPPACYSPPQVAPQYPQHPY 57


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 25.4 bits (53), Expect = 0.38
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -3

Query: 548 SKGRMAIGPEGSHLARQLCYPFPQLSTRWPPHPF 447
           S G     P  +      CY  PQ++ ++P HP+
Sbjct: 24  SPGTDYYNPNANSTYPPACYSPPQVAPQYPQHPY 57


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 0.38
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -3

Query: 548 SKGRMAIGPEGSHLARQLCYPFPQLSTRWPPHPF 447
           S G     P  +      CY  PQ++ ++P HP+
Sbjct: 24  SPGTDYYNPNANSTYPPACYSPPQVAPQYPQHPY 57


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +2

Query: 293 TLPNSEEVNPKSLVKMNNGDTYSCQLLIGA-DGANSAVRRAMGVQY 427
           T PN   ++P+S    N+    +CQ L     G++  V +    QY
Sbjct: 153 TSPNEASMSPQSTSSNNSASPKACQFLYNQFPGSSQVVVKDETCQY 198


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +2

Query: 293 TLPNSEEVNPKSLVKMNNGDTYSCQLLIGA-DGANSAVRRAMGVQY 427
           T PN   ++P+S    N+    +CQ L     G++  V +    QY
Sbjct: 173 TSPNEASMSPQSTSSNNSASPKACQFLYNQFPGSSQVVVKDETCQY 218


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -1

Query: 328 TLWVYFFRIWQCIICNLCF 272
           T W  FF +    ICN C+
Sbjct: 273 TFWSAFFIVNVLYICNQCY 291


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 11/14 (78%), Positives = 12/14 (85%), Gaps = 1/14 (7%)
 Frame = +2

Query: 41  YQIINVIFE-CLET 79
           YQII VIF+ CLET
Sbjct: 243 YQIILVIFDCCLET 256


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 399 AELAPSAPISSWHEYVSPLF 340
           A +A +A +   H Y+SPLF
Sbjct: 99  ANMAAAANLLRPHPYLSPLF 118


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 234 LNNTDNKTLILSMKQRLQIIHCQILKK 314
           +NN  N  L+ SM QR+++    +++K
Sbjct: 1   MNNKLNMVLVKSMLQRIKMEEKLVVEK 27


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +1

Query: 400 GTTRYGCAILVLELRPNGC 456
           GT  Y C I V + RP  C
Sbjct: 251 GTLGYICEINVDDCRPGAC 269


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,353
Number of Sequences: 336
Number of extensions: 3077
Number of successful extensions: 20
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15666150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)