Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0963.Seq
(616 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|c... 43 4e-05
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual 29 0.53
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc... 26 5.0
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 26 5.0
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 26 5.0
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |... 25 6.6
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 25 6.6
SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomy... 25 8.7
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo... 25 8.7
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 25 8.7
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 25 8.7
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 25 8.7
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 8.7
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 25 8.7
>SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|chr
2|||Manual
Length = 466
Score = 42.7 bits (96), Expect = 4e-05
Identities = 18/36 (50%), Positives = 26/36 (72%)
Frame = +1
Query: 508 RWLPSGPIAILPLDSHRSSLVWSTWEDNAKRLLKLP 615
R+LP+GP+A LPL + ++ VWST A +LL+LP
Sbjct: 241 RFLPTGPLAYLPLPDNNATFVWSTRPHIASKLLRLP 276
Score = 38.3 bits (85), Expect = 9e-04
Identities = 21/52 (40%), Positives = 26/52 (50%)
Frame = +2
Query: 365 QLLIGADGANSAVRRAMGVQYLSWNYDQMGVVATLYLAEETDNTTAWQDGCP 520
+LLIGADG NS VR+ + WNY VV TL + A+Q P
Sbjct: 193 KLLIGADGRNSIVRKYANISMPGWNYLTHAVVGTLKIDPLKGPAVAFQRFLP 244
Score = 37.9 bits (84), Expect = 0.001
Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Frame = +3
Query: 9 YSNRVVALSQNTKSLMSSLNVWKHIEDMRLQPVKHMQVWDACSDALISFNSADNYNDDVA 188
YSNR +L+ +T+ + W R+QP +H+ D +++ I + ++ +A
Sbjct: 73 YSNRCSSLTNHTRMFFDKIGAWDFARKDRIQPFQHILASDGLTNSSIHLDQKPG-SEPMA 131
Query: 189 YIVEN----DVLLHAVNTELNNTDNK 254
++ EN LL+++ ++NN K
Sbjct: 132 FMSENVNLQYALLNSIIDKMNNNIKK 157
>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 29.1 bits (62), Expect = 0.53
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 302 NSEEVNPKSLVKMNNGDTYSCQLLIGADGANS 397
N+E +NP S K + GD S Q +I +G N+
Sbjct: 231 NNENLNPTSNTKQSVGDNTSPQTVIDTEGLNA 262
>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
Taz1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 663
Score = 25.8 bits (54), Expect = 5.0
Identities = 18/81 (22%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = +3
Query: 30 LSQNTKSLMSSLNVWKHIEDMRLQPVKHMQVWDACSDALISFNSADNYNDDVAYIVENDV 209
L ++ + + S+ + + D+ KH+ + DAL+S + D++ D A ++ ++
Sbjct: 216 LFEDLEKPLKSIQFFTGLIDLLDNTNKHLTLRSIVLDALLSADEEDSFYGD-ALVLFEEL 274
Query: 210 LLHAVNTELN-NTDNKTLILS 269
++ T+ N + D ILS
Sbjct: 275 VIRYFGTDSNPSIDASEFILS 295
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 25.8 bits (54), Expect = 5.0
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = +3
Query: 27 ALSQNTKSLMSSLNVWKHIEDMRLQPVKHMQVWDACSDALISFNSADNYNDDVAYIVEND 206
AL +++ L+S VWK + V+ +++W + ADN+ D + +
Sbjct: 885 ALVNSSQDLLSDDCVWKLLFTGYRGDVREVKLWKTILGRIHKVLVADNHLD---FEINPL 941
Query: 207 VLLHAVNTEL-NNTDNKTLILSM 272
L + N E+ + TD+ L LS+
Sbjct: 942 TLFKSFNPEVASQTDSPKLTLSL 964
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 25.8 bits (54), Expect = 5.0
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 299 PNSEEVNPKSLVKMNNGDTYSCQLLIGAD 385
PN+ +P L K +NGD Y GAD
Sbjct: 872 PNNATFSPSLLYKASNGDLYVNHTGAGAD 900
>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1032
Score = 25.4 bits (53), Expect = 6.6
Identities = 16/71 (22%), Positives = 35/71 (49%)
Frame = +3
Query: 66 NVWKHIEDMRLQPVKHMQVWDACSDALISFNSADNYNDDVAYIVENDVLLHAVNTELNNT 245
N+++ ++ + + V++++ + D L S N D A ND + H ++ ++NN
Sbjct: 698 NLYEQLQPKKFEFVRYVRNYRGNIDELEKAESPQQ-NSDYA----NDSVQHLLDFDINNM 752
Query: 246 DNKTLILSMKQ 278
D + + M Q
Sbjct: 753 DETAIHMLMNQ 763
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 25.4 bits (53), Expect = 6.6
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 63 LNVWKHIEDMRLQPVKHMQVWDACSDALISFNSADNYNDD 182
LNV+KH+ QP+++M DA++ D DD
Sbjct: 734 LNVYKHLNSDGHQPIRYMMRETDDEDAVMFVVEFDLLEDD 773
>SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 590 LSSHVDQTSELRCESKGRMAIGPE 519
L++ +DQT+E C +K +A PE
Sbjct: 251 LAAKLDQTAEFECGAKWAVARAPE 274
>SPBC8D2.05c |sfi1||spindle pole body protein
Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 840
Score = 25.0 bits (52), Expect = 8.7
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +1
Query: 547 DSHRSSLVWSTWEDNAKRLLKL 612
D ++ W W+DN +R +KL
Sbjct: 499 DHRLLTIAWEAWKDNYQRRIKL 520
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 165 DNYNDDVAYIVENDVLLHAVNTELNNTDNKTLIL 266
+N + + N + +HAVN+ L+N N+T L
Sbjct: 486 NNRQQFIRCVFHNIMQIHAVNSRLSNALNRTQTL 519
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/48 (20%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 135 SDALISFNSADNYNDDVAYIVEN-DVLLHAVNTELNNTDNKTLILSMK 275
SD + FN+A YN++ +++ E+ + + A+ T++ + + +++
Sbjct: 1134 SDLMTMFNNARTYNEEGSFVYEDANKMQTAMETKIEELEEDGTLATLR 1181
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 25.0 bits (52), Expect = 8.7
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +3
Query: 117 QVWDACSDALISFNSADNYNDDVAYIVENDVLLHAVNTELNNTDN-KTLILSMKQRLQ 287
QV+D S + IS++ D+ + N L V LNN + K I ++ +R Q
Sbjct: 930 QVYDTLSKSNISYDKLSLLRDEAMNLCVNKELFSKVVGILNNAEEIKNKIATLCERSQ 987
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 6 EYSNRVVALSQNTKSLMSSLNVWKHIE 86
EY N ++ SQ KSL N K+IE
Sbjct: 1054 EYENLLLISSQTNKSLEDKTNQLKYIE 1080
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 25.0 bits (52), Expect = 8.7
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +3
Query: 99 QPVKHMQVWDACSDALI---SFNSADNYNDDVAYIVENDVLLHAVNTEL 236
QP H ++ + D I +F S +N+ D++ VE H VN+EL
Sbjct: 449 QPFAHSHIYLSPLDIRILKSAFGSYENFPDELVPRVERISSGHLVNSEL 497
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,462,207
Number of Sequences: 5004
Number of extensions: 47509
Number of successful extensions: 149
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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