Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0963.Seq
(616 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0609 - 35042276-35042388,35042476-35042527,35042624-350427... 57 1e-08
02_03_0175 + 15999507-15999839,16000126-16000407,16000736-16000831 33 0.14
03_01_0378 + 2943605-2943690,2943774-2943920,2944607-2944675,294... 32 0.31
03_01_0379 + 2946605-2946684,2946798-2946944,2947420-2947488,294... 32 0.42
01_06_1715 - 39380739-39381764,39382428-39382504,39382605-393829... 31 0.55
02_03_0182 + 16101861-16101955,16102226-16102372,16102465-161025... 30 1.7
01_06_1696 + 39256171-39256393,39256513-39256595,39256692-392568... 29 2.2
01_06_0930 + 33134385-33138257 29 2.9
04_01_0015 - 235068-235231,238714-239701 29 3.9
04_03_0938 + 20933008-20933288,20933408-20933473,20933568-20934099 28 5.1
02_05_0727 + 31264798-31265297,31265962-31266417,31266503-31266938 28 5.1
12_02_0703 + 22282219-22282430,22286054-22287620,22287751-222883... 28 6.8
11_02_0037 - 7613632-7613727,7614452-7615507 27 8.9
09_03_0059 + 11961088-11961474,11962039-11962131 27 8.9
>03_06_0609 -
35042276-35042388,35042476-35042527,35042624-35042725,
35043546-35043745,35045258-35045336,35045541-35045595,
35045947-35046122,35046386-35046988,35047077-35047265,
35048150-35048201,35048289-35048356,35048873-35048911,
35048912-35048970,35049639-35049782,35050136-35050238,
35050368-35050467,35050596-35050612
Length = 716
Score = 56.8 bits (131), Expect = 1e-08
Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Frame = +2
Query: 308 EEVNPKSLVKM--NNGDTYSCQLLIGADGANSAVRRAMGVQYLSWNYDQMGVVATLYLAE 481
EE+N +LVK+ ++G T +L++GADG+ S VR+ G++ WNY Q ++ T +
Sbjct: 234 EELNRSNLVKLELSDGQTLYSKLVVGADGSKSNVRQTAGIKTTGWNYPQSAIICT--VEH 291
Query: 482 ETDNTTAWQDGCP 520
T+N AWQ P
Sbjct: 292 ITENDCAWQRFLP 304
Score = 35.9 bits (79), Expect = 0.026
Identities = 14/31 (45%), Positives = 23/31 (74%)
Frame = +1
Query: 508 RWLPSGPIAILPLDSHRSSLVWSTWEDNAKR 600
R+LPSGPIA+LP+ + S++VW+ + + R
Sbjct: 301 RFLPSGPIALLPIGDNYSNIVWTMSPEESLR 331
>02_03_0175 + 15999507-15999839,16000126-16000407,16000736-16000831
Length = 236
Score = 33.5 bits (73), Expect = 0.14
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +1
Query: 394 LGGTTRYGCAILVLELRPNGCGGHLVLS*GNG 489
LGG CAI+V EL GCG + ++ GNG
Sbjct: 111 LGGAKAGACAIIVEELNAGGCGEGVAVAGGNG 142
>03_01_0378 +
2943605-2943690,2943774-2943920,2944607-2944675,
2944758-2944923,2945000-2945228,2945335-2945888
Length = 416
Score = 32.3 bits (70), Expect = 0.31
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 308 EEVNPKSLVKMNNGDTYSCQLLIGADGANSAVRRAMGV 421
EE ++ +++G T ++LIG DG NS V R +G+
Sbjct: 137 EEDGNAKILHLSDGSTLRAKVLIGCDGINSVVARWLGL 174
>03_01_0379 +
2946605-2946684,2946798-2946944,2947420-2947488,
2947608-2947773,2947889-2948117,2948206-2948645,
2949155-2949702,2949739-2949760
Length = 566
Score = 31.9 bits (69), Expect = 0.42
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 308 EEVNPKSLVKMNNGDTYSCQLLIGADGANSAVRRAMGV 421
EE L+ +++G T ++LIG DG NS V + +G+
Sbjct: 135 EEDGNVKLLHLSDGSTIRAKVLIGCDGVNSVVAKWLGL 172
>01_06_1715 -
39380739-39381764,39382428-39382504,39382605-39382991,
39383045-39383251,39384168-39384273
Length = 600
Score = 31.5 bits (68), Expect = 0.55
Identities = 13/65 (20%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = +3
Query: 66 NVWKHIEDMRLQPVKHMQVWDACSDALISFNSADNYNDDVAYI-VENDVLLHAVNTELNN 242
N+W+H+ ++ VK ++ D+C D I NS + ++ ++ ++D + + + ++
Sbjct: 138 NIWQHVYRKKMHEVKEIEGNDSCDDLQILRNSFEGLDEKSLFMRSDSDTMRKRKDVDKDH 197
Query: 243 TDNKT 257
D ++
Sbjct: 198 ADQES 202
>02_03_0182 +
16101861-16101955,16102226-16102372,16102465-16102515,
16102617-16102782,16103055-16103283,16104067-16104638
Length = 419
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 344 NGDTYSCQLLIGADGANSAVRRAMGV 421
+G T ++LIG DGANS V + +G+
Sbjct: 146 DGHTIKAKVLIGCDGANSVVAKYLGL 171
>01_06_1696 +
39256171-39256393,39256513-39256595,39256692-39256831,
39256882-39257398,39257518-39257565,39257832-39258006,
39258122-39258234,39258329-39258425,39258579-39258798,
39258985-39259144,39259233-39259646
Length = 729
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +2
Query: 362 CQLLIGADGANSAVRRAMGV 421
C LL+GADGA S VR G+
Sbjct: 244 CGLLLGADGARSTVRELAGI 263
>01_06_0930 + 33134385-33138257
Length = 1290
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/39 (48%), Positives = 23/39 (58%)
Frame = -1
Query: 508 LPGSCVIRFLS*VQGGHHTHLVVVPRQVLHTHSASYRRV 392
LP CV+ LS +Q HH HL+ VP+ L T S S RV
Sbjct: 1128 LPDLCVLEGLSYLQL-HHVHLIDVPK--LTTESISQFRV 1163
>04_01_0015 - 235068-235231,238714-239701
Length = 383
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +2
Query: 302 NSEEVNPKSLVKMNNGDTYSCQLLIGADGANSAVRRAMGVQYLSWNYDQMGV 457
N V+ KSL+ M G +YS QL + R ++Y W+ D+ G+
Sbjct: 182 NRVGVSKKSLIDMGTG-SYSVQLYTNGTRRVTLEHRNPSIEYWYWSPDESGM 232
>04_03_0938 + 20933008-20933288,20933408-20933473,20933568-20934099
Length = 292
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +2
Query: 326 SLVKMNNGDTYSCQLLIGADGANSAVRRAMGV 421
++V +++G ++L+G DG +SAV R +G+
Sbjct: 167 AVVGLDDGTVIRSRVLVGCDGVHSAVARWLGM 198
>02_05_0727 + 31264798-31265297,31265962-31266417,31266503-31266938
Length = 463
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 353 TYSCQLLIGADGANSAVRRAMG 418
T+ ++GADGANS V + MG
Sbjct: 198 TFEVDAIVGADGANSRVAKDMG 219
>12_02_0703 +
22282219-22282430,22286054-22287620,22287751-22288371,
22288434-22288484
Length = 816
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -1
Query: 463 GHHTHLVVVPRQVLH-THSASYRRVSSVGANQQL 365
GH+ L+V+ R +LH +A S++G+NQ L
Sbjct: 364 GHYKELMVLGRDILHKLAAADEHNCSAIGSNQGL 397
>11_02_0037 - 7613632-7613727,7614452-7615507
Length = 383
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -1
Query: 466 GGHHTHLVVVPRQVLHTHSASYRRVSSVG 380
G HH H +++P ++HT + VS G
Sbjct: 261 GHHHHHQIIMPLNMIHTSESDEMDVSGGG 289
>09_03_0059 + 11961088-11961474,11962039-11962131
Length = 159
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 408 RRTAELAPSAPISSWHEYVSPLFILTKLFGFTSS 307
RRT + P+ + +S LF+L LFGF S+
Sbjct: 9 RRTEGVVAPPPLGAERRLLSCLFLLGALFGFASA 42
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,031,910
Number of Sequences: 37544
Number of extensions: 325148
Number of successful extensions: 882
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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