Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0963.Seq
         (616 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003384-6|AAB54238.2|  451|Caenorhabditis elegans Coenzyme q (u...    68   6e-12

>AF003384-6|AAB54238.2|  451|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 6 protein.
          Length = 451

 Score = 67.7 bits (158), Expect = 6e-12
 Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
 Frame = +2

Query: 254 NFNIVYEAKIADYTLPNSEEVNPKSLVKMNNGDTYSCQLLIGADGANSAVRRAMGVQYLS 433
           N ++   AK+ D ++PN+ E    + +K+ NGD     LLIGADG NS VR A  + Y +
Sbjct: 145 NVDVKTGAKVEDCSIPNALE--NMATIKLENGDVIETSLLIGADGVNSKVRHASNLDYTT 202

Query: 434 WNYDQMGVVATLYL-AEETDNTTAWQ 508
           +NY+Q G+VA + +      N TAWQ
Sbjct: 203 FNYNQHGLVAIVNIETANGKNETAWQ 228



 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
 Frame = +3

Query: 9   YSNRVVALSQNTKSLMSSLNVWKHIEDMRLQPVKHMQVWDACSDALISFNSADNYNDDVA 188
           ++NRVVA S  +      L VW  I   R + V  + V+D+CS + I F       ++VA
Sbjct: 67  FNNRVVATSPTSIDTFKKLGVWDQINSHRTKKVNRLFVFDSCSTSEIEFERGQ--QEEVA 124

Query: 189 YIVENDVL---LHAVNTELNNTDNKT 257
           +I+END++   L+    E  N D KT
Sbjct: 125 FIIENDLIVGSLYEKLAEYKNVDVKT 150



 Score = 37.9 bits (84), Expect = 0.006
 Identities = 17/36 (47%), Positives = 23/36 (63%)
 Frame = +1

Query: 508 RWLPSGPIAILPLDSHRSSLVWSTWEDNAKRLLKLP 615
           R+   GP+A+LPL    S L WST  + A+RL +LP
Sbjct: 229 RFTTLGPVALLPLSDTVSGLTWSTSPEEAQRLKQLP 264


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,752,438
Number of Sequences: 27780
Number of extensions: 273995
Number of successful extensions: 758
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)