Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0963.Seq
         (616 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   4.1  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   7.2  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   9.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.6  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   9.6  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
 Frame = +3

Query: 39  NTKSLMSSLNVWKHIEDMRLQPV--KHMQVWDACSDALISFNSADNYNDDVAYIVENDVL 212
           NT+SLM S N    ++  R+Q V    + V     + ++ F  A+N      +     + 
Sbjct: 278 NTESLMKSENQGNDVQYERVQDVFDSQLTVKAVSKNGVLLFGLANNTLS--CWNEHQSLD 335

Query: 213 LHAVNTELNNTDNKTLILSMK 275
              ++    N D   +++SMK
Sbjct: 336 RQNIDVVARNEDTLQMVVSMK 356



 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -3

Query: 110 FHRLQSHILN 81
           FHRL SH LN
Sbjct: 221 FHRLSSHTLN 230


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 6/18 (33%), Positives = 9/18 (50%)
 Frame = +1

Query: 529 IAILPLDSHRSSLVWSTW 582
           +   P D  R  L W++W
Sbjct: 135 VEFFPFDEQRCVLKWASW 152


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 428 LSWNYDQMGVVATLYLAEE 484
           L WN ++ G V  LY+  E
Sbjct: 95  LKWNPEEYGGVEMLYVPSE 113


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -3

Query: 590 LSSHVDQTSELRCESKGRMAIGP 522
           LS H+   +E RCE       GP
Sbjct: 340 LSVHLGGNAEFRCEVSTHPQAGP 362


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -3

Query: 590 LSSHVDQTSELRCESKGRMAIGP 522
           LS H+   +E RCE       GP
Sbjct: 340 LSVHLGGNAEFRCEVSTHPQAGP 362


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +3

Query: 414 WVCNTCLGTTTKWV 455
           WV N   G+ T WV
Sbjct: 336 WVANVPNGSVTNWV 349


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,842
Number of Sequences: 438
Number of extensions: 3534
Number of successful extensions: 19
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)