Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0961X.Seq
         (477 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomy...    26   2.6  
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos...    26   2.6  
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb...    26   3.4  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       26   3.4  

>SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 215

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 235 KERKSLKRKRNEENIIKREKRV 170
           KER+ L RKR EE I+   KR+
Sbjct: 182 KEREELFRKRKEEMILAARKRM 203


>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 193 CSLRYACVSVTSFLWLFHANSAWRFSIY 276
           C++ Y C+++  F W     S  RF++Y
Sbjct: 430 CAIVYCCIALKRFPWKVPHTSDKRFNLY 457


>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 602

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 19/57 (33%), Positives = 29/57 (50%)
 Frame = -2

Query: 476 SLSEARSRNIVNVNIGSLNKLNSLEPVSTLDKTIFQSKQNACSEDSVARYVNFSFHN 306
           SL +A S N V + + +   L    PVS L K++ +S + A  E  +   + FSF N
Sbjct: 259 SLLDAYSNN-VKLLLQTAITLEPQVPVSILAKSLPKSVKGAVQEFVIKAELTFSFSN 314


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 248 PTLPGGLVSTSSDIPSIKVSYGN*N*HISLRYLQNKRS 361
           P +P   +ST+ ++P++  S  + N H  L ++QN  S
Sbjct: 623 PDVPSPCISTNPNLPALVGSLDSVNLHHLLGFIQNTYS 660


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,567,817
Number of Sequences: 5004
Number of extensions: 25209
Number of successful extensions: 62
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)