Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0961X.Seq
         (477 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00031-4|AAK18867.1|  378|Caenorhabditis elegans Hypothetical pr...    54   4e-08
U80444-3|AAB37789.1|  326|Caenorhabditis elegans Serpentine rece...    31   0.43 
Z35663-2|CAA84735.2|  335|Caenorhabditis elegans Hypothetical pr...    29   1.3  
AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein.      27   9.2  
AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp ge...    27   9.2  

>U00031-4|AAK18867.1|  378|Caenorhabditis elegans Hypothetical
           protein B0361.6 protein.
          Length = 378

 Score = 54.4 bits (125), Expect = 4e-08
 Identities = 36/85 (42%), Positives = 44/85 (51%)
 Frame = -3

Query: 259 RQSWREIAKERKSLKRKRNEENIIKREKRVALXXXXXXXXXXXXXXXXXXXEISTVSIAV 80
           R  WR++  E+K    ++NEE IIK  +                          T+SIAV
Sbjct: 27  RLDWRKMKDEKK----RKNEEKIIKEAEEAKKAKIEKVDHTPPF----------TISIAV 72

Query: 79  PSSILENAQSAELRTYLAGQIARAA 5
           P   L NAQSAELRTY+AGQIARAA
Sbjct: 73  PGQFLNNAQSAELRTYMAGQIARAA 97


>U80444-3|AAB37789.1|  326|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 14 protein.
          Length = 326

 Score = 31.1 bits (67), Expect = 0.43
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 307 LWKLKLTYLATLSSEQAFCFDWNIVLSRV 393
           +W+  L Y+ +      FC DWNI +SRV
Sbjct: 151 IWRKSLKYVISAVFLIPFCADWNIAISRV 179


>Z35663-2|CAA84735.2|  335|Caenorhabditis elegans Hypothetical
           protein T04A8.2 protein.
          Length = 335

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 307 LWKLKLTYLATLSSEQAFCFDWNIVLSRV 393
           +W   L YL  L     F  DWN+++SRV
Sbjct: 149 MWMRPLKYLIILVFVIPFSIDWNLIISRV 177


>AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein.
          Length = 1359

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 265 TSRQSWREIAKERKSLKRKRNEENIIKR 182
           TS +S  E  +ERK  K K+N+E  +K+
Sbjct: 151 TSSESSEESEEERKVKKSKKNKEKSVKK 178


>AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp gene
           related protein 1 protein.
          Length = 1359

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 265 TSRQSWREIAKERKSLKRKRNEENIIKR 182
           TS +S  E  +ERK  K K+N+E  +K+
Sbjct: 151 TSSESSEESEEERKVKKSKKNKEKSVKK 178


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,480,688
Number of Sequences: 27780
Number of extensions: 136075
Number of successful extensions: 336
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)