Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0958.Seq
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   1.6  
SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo...    27   2.8  
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos...    26   3.8  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    26   3.8  
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    25   8.7  
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    25   8.7  
SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.7  
SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce...    25   8.7  

>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = -3

Query: 590  HRNLLLWFQPLETSSVLSKLQFLIKSRPTSLAVGHCCAGILKGFLSPSALLET 432
            H NL     P+  S+  S+L+FL   RP + + G  C  I+  F +PS L  T
Sbjct: 1066 HSNLHSPVSPVVDSNEDSRLKFLSTQRP-AFSFGP-CGTIVMAFSTPSGLYTT 1116


>SPBC4C3.07 |||translation initiation factor
           eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -3

Query: 521 IKSRPTSLAVG-HCCAGILKGFLSPSALLETPFVTPFPPLALPLGTVP 381
           +K+ P  + VG +  +  L  F   SAL++  + +P  P   PLGT P
Sbjct: 94  LKANPREVVVGWYATSPDLDAF---SALIQNLYASPAEPGTAPLGTYP 138


>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 400

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 612 AASVAATAPQPPAMVSAS*NQLRPVQASIPHKE*AHLP 499
           AA+ AA+A  PP + S   +Q +PV    P+     LP
Sbjct: 301 AAAAAASATAPPQVTSPMVSQTQPVNPITPNYSSIPLP 338


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1369

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 405  QWRKRSHKRRLQQRTWRQETLQN 473
            +W+K   + + +Q  WRQE L N
Sbjct: 1253 EWKKYGKRFKEEQARWRQEELSN 1275


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
 Frame = +2

Query: 272 QDSTTDTERISD*RRKVEWRLRTQVT*ENQTLIPSLMAPYLTAMPMAETESQTASPTAHL 451
           ++ T   E + D    V + L   V     T +PS  +  +     +E  S  + PT  +
Sbjct: 54  RNETPLEEILHDATDLVTFHLVIAVFNSTSTTLPSATSSSVPQSRTSELSSTNSIPTPRI 113

Query: 452 ETRNPSE-SRHSSAQ 493
            + NP E SR   AQ
Sbjct: 114 TSLNPEELSRRERAQ 128


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = -2

Query: 423 DSVSAIGIAVRYGAINDGIRVWFSQVTWVLKRHSTLRLQSEILS 292
           + ++A  + ++Y  I   + V+  +  WV+K  ++LR   E+LS
Sbjct: 624 EGIAAFNV-LQYKGIPSRLLVFEDENHWVIKPDNSLRWHKEVLS 666


>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 408 WRKRSHKRRLQQRTWRQETLQNPGTAVPN 494
           W +R H  +   R   +E LQ P T +P+
Sbjct: 88  WCQRCHDLKFHSRIRPKELLQEPQTTLPD 116


>SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 462

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +3

Query: 9  APTEPRSRRNWIPAR 53
          +PT+P++ +NWI AR
Sbjct: 29 SPTDPKNPKNWIYAR 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,456,458
Number of Sequences: 5004
Number of extensions: 49577
Number of successful extensions: 169
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)