Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0958.Seq
(616 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0037 - 19478885-19480472,19483125-19483267 33 0.14
02_05_1137 - 34372803-34372869,34373088-34373229,34373334-343734... 30 1.7
02_01_0420 + 3076493-3076646,3076721-3077704,3078013-3078824 29 2.9
08_02_0700 + 20157793-20158461 29 3.9
06_01_0721 - 5255422-5255790,5256287-5256660,5256845-5257192,525... 29 3.9
02_04_0398 - 22598895-22599100,22599865-22599943 29 3.9
07_01_0743 + 5678086-5678098,5678436-5678560,5678666-5678800,567... 28 5.1
03_06_0382 - 33530943-33530966,33531160-33531360,33535494-33537026 28 5.1
12_02_1001 - 25162761-25162977,25163060-25163230,25163309-251638... 28 6.8
07_01_1161 - 10991245-10991283,10991389-10991427,10991513-109917... 28 6.8
01_05_0342 - 21147940-21148213,21149626-21149697,21150273-211503... 28 6.8
01_02_0053 + 10673264-10674510,10674552-10674576,10674802-106748... 28 6.8
01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-33... 28 6.8
07_03_0178 + 14774076-14774168,14774240-14774578 27 8.9
06_01_0257 - 1908922-1909283,1909828-1909924,1910695-1910786,191... 27 8.9
04_04_0716 + 27513201-27513854 27 8.9
03_05_0988 - 29458789-29459776,29459875-29460035,29460134-294602... 27 8.9
02_04_0201 - 20869057-20869361,20869506-20869922,20870184-20870544 27 8.9
>11_06_0037 - 19478885-19480472,19483125-19483267
Length = 576
Score = 33.5 bits (73), Expect = 0.14
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +2
Query: 446 HLETRNPSESRHS-SAQPPGRWAYSL*GIEAWTGRSWFQEAETIAGGCG 589
+LE+ P R SA PPGRW ++L +W SW + GGCG
Sbjct: 295 NLESAKPEWRRVKVSASPPGRWGHTL----SWLNGSWL----VVFGGCG 335
>02_05_1137 -
34372803-34372869,34373088-34373229,34373334-34373403,
34373521-34373823,34374215-34374280,34374425-34374490,
34374584-34374682,34376153-34376310,34376951-34377039,
34377209-34377591
Length = 480
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +3
Query: 411 RKRSHKRRLQQRTWRQETL--QNPGTAVPNRQGGGPTLYEELKLGQD 545
R RS +RR WRQE ++PG A RQG + ++G+D
Sbjct: 9 RDRSSRRRRFSPAWRQELARQESPGVAGGRRQGRWCRSWHGRRIGRD 55
>02_01_0420 + 3076493-3076646,3076721-3077704,3078013-3078824
Length = 649
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 455 SPSALLETPFVTPFPPLALPLGT 387
+P LE P V FPPL LP+G+
Sbjct: 604 APDVPLEKPTVVCFPPLTLPVGS 626
>08_02_0700 + 20157793-20158461
Length = 222
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -1
Query: 256 RNNNAGHGDAHCRCCGSSRHWGC 188
R + A HG CR CG SRH GC
Sbjct: 198 REDEALHGK--CRKCGRSRHHGC 218
>06_01_0721 -
5255422-5255790,5256287-5256660,5256845-5257192,
5257369-5257497,5257585-5257658,5257745-5257816,
5257901-5257969,5258059-5258130,5258208-5258279,
5258512-5258583,5258735-5258806,5258887-5258958,
5259050-5259121,5259203-5259274,5259427-5259498,
5259599-5259670,5259764-5259832,5260072-5260143,
5260428-5260499,5260579-5260650,5260919-5260990,
5261015-5261161,5261249-5261378,5262212-5262290
Length = 931
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 226 GRRHGLRCCCAILLAAGFYYRHRKNLRLKAQG 321
GRR G+ CCC + AG + R N LK+ G
Sbjct: 96 GRRGGVLCCCLEMWLAGAW--TRSNFDLKSNG 125
>02_04_0398 - 22598895-22599100,22599865-22599943
Length = 94
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/16 (62%), Positives = 10/16 (62%), Gaps = 2/16 (12%)
Frame = -1
Query: 226 HCR--CCGSSRHWGCC 185
HCR CCG HWG C
Sbjct: 75 HCRWGCCGHRNHWGEC 90
>07_01_0743 +
5678086-5678098,5678436-5678560,5678666-5678800,
5679128-5679200,5679581-5679654,5680292-5680396,
5680637-5680881,5680965-5681052,5681202-5681244,
5681319-5681475,5681648-5681776,5682012-5682084,
5682281-5682445,5682530-5682544,5682651-5682780,
5684517-5684651,5684880-5684945,5685088-5685170,
5685503-5685549,5685736-5685814,5685914-5686006
Length = 690
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 156 NIIDGLRDEVPTSLAAFTTHSYLMSSWRP 70
NI GLR E +A +T +YL WRP
Sbjct: 615 NIEKGLRVETKFIMATWTLRTYLRLPWRP 643
>03_06_0382 - 33530943-33530966,33531160-33531360,33535494-33537026
Length = 585
Score = 28.3 bits (60), Expect = 5.1
Identities = 20/59 (33%), Positives = 27/59 (45%)
Frame = +3
Query: 186 QQPQWRLDPQHLQWASPWPALLLRYSTCSRILLQTQKESPTEGARWSGV*EPKLPERTK 362
Q+P+ PQ A P P L+ S +RI + + PT AR S EP+ TK
Sbjct: 33 QEPRVMASPQ----APPLPLSSLQESRSARIRIPRDEPRPTPPARSSSREEPRFVAETK 87
>12_02_1001 -
25162761-25162977,25163060-25163230,25163309-25163814,
25163827-25164195,25164283-25164729,25164808-25164833,
25164987-25165515
Length = 754
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +2
Query: 317 KVEWRLRTQVT*ENQTLIPSLMAPYLTAMPMAETESQTASPTAHLETRNPSESRHSSA 490
K++ +R ++T E + S+ A + + Q A+ AH E +P+E R S A
Sbjct: 258 KIQESIRAELTSEFDEKLESMRAKIRQEIREEQQIPQAAAAAAHKELGSPTEKRSSCA 315
>07_01_1161 -
10991245-10991283,10991389-10991427,10991513-10991738,
10991902-10992054,10992133-10992638,10992651-10993019,
10993107-10993553,10993752-10994339
Length = 788
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +2
Query: 317 KVEWRLRTQVT*ENQTLIPSLMAPYLTAMPMAETESQTASPTAHLETRNPSESRHSSA 490
K+ +R ++T E + S+ A + + Q A+ AH E +P+E R S A
Sbjct: 269 KIRESIRAELTSEFDKKLESMRAKIRQEIREEQQIPQAAAAAAHKELESPTEKRSSCA 326
>01_05_0342 -
21147940-21148213,21149626-21149697,21150273-21150397,
21150625-21150684,21150824-21150902,21151041-21151126,
21151224-21151544
Length = 338
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Frame = +2
Query: 365 LIPSLMAPYLTAMPMAE---TESQTASPTAHLET-RNPS 469
++P+L+ L A P T S TASP+AHL T R PS
Sbjct: 1 MLPALLPGCLAAPPPPPPLVTTSSTASPSAHLRTLRLPS 39
>01_02_0053 +
10673264-10674510,10674552-10674576,10674802-10674886,
10675074-10675084
Length = 455
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 365 LIPSLMAPYLTAMPMAETESQTASPTAHLETRNPSESRHSSAQPP 499
L+P+ + Y T + ++ + ASP+ HL + SRH + P
Sbjct: 83 LVPTFLRRYPTLLSVSPPPNPVASPSPHLLSFLEFASRHHALHSP 127
>01_01_0047 +
334809-334877,334966-335074,335159-335299,336337-336498,
336577-336734,337180-337310,337385-337472,337587-337690,
338346-338444,339060-339116,339262-339337,339519-339602,
339969-340010,340128-340198,341516-341564,342370-342441,
343149-343286,343393-343473,344166-344353,344591-345188,
345274-345342,346729-346854,347048-347175,347986-348142,
348342-348388,348472-348535,348691-348765,349292-349414,
349797-349982,351179-351303,351390-351459,351974-352101,
352585-352726,353065-353163,353239-353285,353598-353652,
353758-353967,354686-354757,354836-354905,355231-355414,
355521-355644,355732-355863,356252-356317,356805-356852,
357572-357676,357728-357865,358097-358399,358482-358594,
359082-359148,359236-359310,359395-359517,359610-359618,
360156-360320,360401-360502,361545-361696,361794-361995,
362079-362126,362215-362298,362613-362657,363302-363385,
363890-363970,364044-364133,364217-364279,364824-364841,
365238-365378,365494-365550,366091-366185,366275-366383,
367067-367156,367308-367387,367480-367558,367742-367903,
368005-368136,368335-368469,368553-368618,369317-369457,
369575-369648,369685-369910
Length = 2905
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 204 LDPQHLQWASPWPALLLRYSTCSRILLQTQKESPTEGA 317
L P HL ++ WP L++ + C + +K SP A
Sbjct: 52 LKPAHLPASATWPFLIMALTKCVIADISGKKRSPKSAA 89
>07_03_0178 + 14774076-14774168,14774240-14774578
Length = 143
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -3
Query: 470 LKGFLSPSALLETPFVTPFPPLALPLGTVPLMTV 369
+ G P + P V PFPP+A P P++ +
Sbjct: 15 IAGVSVPDPAIAMPSVVPFPPIARPSVLDPIVVI 48
>06_01_0257 -
1908922-1909283,1909828-1909924,1910695-1910786,
1910873-1910993,1911672-1911866
Length = 288
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -2
Query: 474 DSEGFLVSKCAVGDAVCDSVSAIGIAVRYGAINDGIR 364
++E L+ K A +A +S +GIA + AI DG+R
Sbjct: 181 EAEKILLVKKAEAEAEAKHLSGVGIARQRQAITDGLR 217
>04_04_0716 + 27513201-27513854
Length = 217
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = +3
Query: 153 CSQPAAKSLQPQQPQWRLDPQHLQWASPWPALLLRYSTCSRI 278
CS +A S QP P DP + P L LRY T S +
Sbjct: 148 CSVASAASPQPPPPDAEADPDSTLFDLPDLLLDLRYETSSSL 189
>03_05_0988 -
29458789-29459776,29459875-29460035,29460134-29460271,
29460367-29460543
Length = 487
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 468 QNPGTAVPNRQGGGPTLYEELKLGQDGAGFKRLK 569
+NP R+GGG +++ EL L QD G K
Sbjct: 71 KNPHALGLRREGGGASVFRELALFQDYHGLPAFK 104
>02_04_0201 - 20869057-20869361,20869506-20869922,20870184-20870544
Length = 360
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +2
Query: 365 LIPSLMAPYLTAMPMAETES-QTASPTAHLETRNPSESRHSSAQPPGRW 508
L+ SL+AP AMP E ++ + A L+T+ P +S A P W
Sbjct: 16 LLSSLLAPPAIAMPSIEEQAGALIAWKATLQTQEPLQSWDRKAWPCHSW 64
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,275,627
Number of Sequences: 37544
Number of extensions: 426773
Number of successful extensions: 1623
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1620
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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