Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0958.Seq
         (616 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73977-1|CAA98290.1|  573|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z81030-7|CAB02711.1|  366|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z54236-10|CAA90986.1|  407|Caenorhabditis elegans Hypothetical p...    29   2.6  
Z54235-12|CAA90977.1|  407|Caenorhabditis elegans Hypothetical p...    29   2.6  
U80032-4|AAL16309.2| 1553|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U53153-1|AAC69039.4|  715|Caenorhabditis elegans Hypothetical pr...    28   6.1  
AF025471-1|AAB71058.1|  379|Caenorhabditis elegans Hypothetical ...    28   6.1  
U53155-1|AAC48268.1|  393|Caenorhabditis elegans Oocyte maturati...    27   8.1  

>Z73977-1|CAA98290.1|  573|Caenorhabditis elegans Hypothetical
           protein T28B11.1 protein.
          Length = 573

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 24/74 (32%), Positives = 35/74 (47%)
 Frame = +2

Query: 257 LFYLQQDSTTDTERISD*RRKVEWRLRTQVT*ENQTLIPSLMAPYLTAMPMAETESQTAS 436
           +F+    S  + E+I D      ++ RT    ENQ     L+    TAM +A+ +    +
Sbjct: 201 VFFKNFCSFLEREKIEDPMSPSSYKGRTAYY-ENQ-----LIQDKTTAMSLADCQIVRLN 254

Query: 437 PTAHLETRNPSESR 478
           PTA LE RN S  R
Sbjct: 255 PTAELEMRNQSAGR 268


>Z81030-7|CAB02711.1|  366|Caenorhabditis elegans Hypothetical
           protein C01G10.9 protein.
          Length = 366

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = -3

Query: 560 LETSSVLSKLQFLIKSRPTSLAVGHCCAGI 471
           L++ S++ K+ FLI SRPT++ + +   G+
Sbjct: 91  LDSESIIQKINFLISSRPTAVDLRNSLNGL 120


>Z54236-10|CAA90986.1|  407|Caenorhabditis elegans Hypothetical
           protein C09G9.6 protein.
          Length = 407

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = +2

Query: 401 MPMAETESQTASPTAHLETRNPSESRHSSAQPPGRWAY--SL*GIEAW 538
           +P+  T   T  P   L T+   ++  +   PP RW    S+  ++AW
Sbjct: 247 LPLGPTPVSTRGPRYELPTKELHDAEGAMTYPPSRWPLDPSMFALDAW 294


>Z54235-12|CAA90977.1|  407|Caenorhabditis elegans Hypothetical
           protein C09G9.6 protein.
          Length = 407

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = +2

Query: 401 MPMAETESQTASPTAHLETRNPSESRHSSAQPPGRWAY--SL*GIEAW 538
           +P+  T   T  P   L T+   ++  +   PP RW    S+  ++AW
Sbjct: 247 LPLGPTPVSTRGPRYELPTKELHDAEGAMTYPPSRWPLDPSMFALDAW 294


>U80032-4|AAL16309.2| 1553|Caenorhabditis elegans Hypothetical protein
            C32E12.4 protein.
          Length = 1553

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 329  RLRTQVT*ENQTLIPSLMAPYLTAMPMAETESQTASPTA 445
            R+R Q      T + S+  P  TA+P + T S T SP A
Sbjct: 1401 RIRNQAAASAGTTVSSVTTPASTALPSSATPSVTDSPKA 1439


>U53153-1|AAC69039.4|  715|Caenorhabditis elegans Hypothetical
           protein T19A5.3a protein.
          Length = 715

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = +2

Query: 290 TERISD*RRKVEWRLRTQVT*ENQTLIPSLMAPYLTAMPMAETESQTASPTAHLET 457
           T   SD RR+   R+ T+ + ++Q  +P  +AP   + P+  T S T S  +  ET
Sbjct: 57  THEFSD-RRRQPSRVSTEDSEQDQVFVPRAVAPPRASRPIV-TSSTTESAESSAET 110


>AF025471-1|AAB71058.1|  379|Caenorhabditis elegans Hypothetical
           protein R52.3 protein.
          Length = 379

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 237 WPALLLRYSTCSRILLQTQKESPTEGARWS 326
           W   +L+Y  C  I L  QKE   EG +WS
Sbjct: 120 WKIRILKYEECLGIYLDCQKEI-YEGRKWS 148


>U53155-1|AAC48268.1|  393|Caenorhabditis elegans Oocyte maturation
           defective protein2 protein.
          Length = 393

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = +2

Query: 401 MPMAETESQTASPTAHLETRNPSESRHSSAQPPGRW 508
           MP+  T      P   L ++ P E+  +  +PP  W
Sbjct: 235 MPLGPTPVSIRGPRYELPSKKPLETEEAGNRPPSSW 270


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,040,014
Number of Sequences: 27780
Number of extensions: 300417
Number of successful extensions: 1051
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)