Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0958.Seq
         (616 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.4  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    23   2.4  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    23   2.4  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   3.1  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   3.1  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   3.1  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   4.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.5  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              21   7.2  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    21   7.2  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = +3

Query: 75   SKMTSDMNAS*KLLMTSEPRLSARQ*CSQPAAKSLQPQQPQWRLDPQHLQWASPWPALLL 254
            SK+  D ++S K       +   +Q   QP  +S QPQQ Q +   Q  Q     P    
Sbjct: 1489 SKLIVD-HSSQKTQQQQPQQQQQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQQPQQQQ 1547

Query: 255  R-YSTCSRILLQTQK 296
            + Y   S +++Q Q+
Sbjct: 1548 KEYGAVSGLVVQLQR 1562


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 450 KCAVGDAVCDSV 415
           KCA+G+A CD V
Sbjct: 53  KCALGEAPCDPV 64


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 450 KCAVGDAVCDSV 415
           KCA+G+A CD V
Sbjct: 53  KCALGEAPCDPV 64


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +1

Query: 184 RSSPSGDWIRSTCSGRRHGLRCCCAILLAA 273
           R   +G W+   CS  R     C  +LL A
Sbjct: 72  RQKAAGHWVIHPCSSFRFYWDLCMLLLLVA 101


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +1

Query: 184 RSSPSGDWIRSTCSGRRHGLRCCCAILLAA 273
           R   +G W+   CS  R     C  +LL A
Sbjct: 72  RQKAAGHWVIHPCSSFRFYWDLCMLLLLVA 101


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +1

Query: 184 RSSPSGDWIRSTCSGRRHGLRCCCAILLAA 273
           R   +G W+   CS  R     C  +LL A
Sbjct: 72  RQKAAGHWVIHPCSSFRFYWDLCMLLLLVA 101


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 238 GLRCCCAILLAAGFYYRHRKN 300
           G RC   ILL +G Y+  R N
Sbjct: 608 GCRCVKGILLKSGLYHVLRGN 628


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 89   RYECVVKAANDVGTSSLSPSIMFTTSGQE 175
            RY+  V A N +GT   S  +   T G +
Sbjct: 1432 RYQIYVTAYNGIGTGDPSDMLNTRTKGSK 1460


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 601 SGDRTATSCYGFSLLKPAPSCPS 533
           SGD + T C GF   +  PS  S
Sbjct: 61  SGDISVTKCEGFCNSQVQPSVAS 83


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 601 SGDRTATSCYGFSLLKPAPSCPS 533
           SGD + T C GF   +  PS  S
Sbjct: 61  SGDISVTKCEGFCNSQVQPSVAS 83


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,601
Number of Sequences: 438
Number of extensions: 4056
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)