Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0957.Seq
         (711 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.53 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    24   1.6  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    24   1.6  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    24   1.6  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    24   1.6  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.8  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   5.0  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   8.7  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   8.7  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   8.7  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +2

Query: 305 AVPSTCPSLPSRM--VSSR*NPPPATPTWEVRTLTIAWSTTLSRSSRGNTKRTSLPT 469
           A  S+C  +P  +  + SR   PPA+ T    T+T   +TT + ++      T+  T
Sbjct: 74  AFSSSCDPVPGNLEQIGSRPLHPPASSTSLPATITTTTTTTTTTTATAAATATTTAT 130


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
          channel variant 4 protein.
          Length = 489

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 75 VSTMELTSSGKGFVFTLICYLDL 7
          V ++ LTS     +FT++C L L
Sbjct: 19 VLSLSLTSLASSLIFTILCILTL 41


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
          channel variant 3 protein.
          Length = 475

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 75 VSTMELTSSGKGFVFTLICYLDL 7
          V ++ LTS     +FT++C L L
Sbjct: 19 VLSLSLTSLASSLIFTILCILTL 41


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
          channel variant 1 protein.
          Length = 509

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 75 VSTMELTSSGKGFVFTLICYLDL 7
          V ++ LTS     +FT++C L L
Sbjct: 19 VLSLSLTSLASSLIFTILCILTL 41


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
          channel protein.
          Length = 458

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 75 VSTMELTSSGKGFVFTLICYLDL 7
          V ++ LTS     +FT++C L L
Sbjct: 19 VLSLSLTSLASSLIFTILCILTL 41


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 391 HLPSGCRRRWISPRRYHP 338
           H P+G  + WI+  RY P
Sbjct: 794 HTPNGIVKTWIAHDRYLP 811


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 161 QRQATKDAGTISGLNVLRIINEPTAAAIAYG 253
           Q +A K A  +   N   II+EPT     YG
Sbjct: 353 QAEAEKHAAMLYQYNFNIIISEPTERISPYG 383


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 570 YPQRENLSQCSLVWTMTRSSF 508
           Y    +L  C  +WTMT  +F
Sbjct: 128 YAMLGSLFGCGSIWTMTMIAF 148


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 570 YPQRENLSQCSLVWTMTRSSF 508
           Y    +L  C  +WTMT  +F
Sbjct: 94  YAMLGSLFGCGSIWTMTMIAF 114


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 570 YPQRENLSQCSLVWTMTRSSF 508
           Y    +L  C  +WTMT  +F
Sbjct: 4   YAMLGSLFGCGSIWTMTMIAF 24


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,862
Number of Sequences: 438
Number of extensions: 4660
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)