Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0956X.Seq
(535 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha... 29 0.44
SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar... 29 0.44
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 29 0.58
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 29 0.58
SPAC1805.16c |||purine nucleoside phosphorylase |Schizosaccharom... 28 1.0
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 27 1.3
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 27 1.3
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 27 1.3
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 27 2.3
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 26 3.1
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p... 26 4.1
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 26 4.1
SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp... 25 5.4
SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c... 25 7.1
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 9.4
SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5 |Schizo... 25 9.4
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po... 25 9.4
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po... 25 9.4
>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 29.1 bits (62), Expect = 0.44
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -2
Query: 336 VKFIVFQGRRERSAALGACTSEVEQFIVGVSMSCR 232
+KFIV+ G R+ +A + + S + I+GV+ R
Sbjct: 53 IKFIVWHGSRKHNACIRSVYSIINNMIIGVTQGFR 87
>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 189
Score = 29.1 bits (62), Expect = 0.44
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 336 VKFIVFQGRRERSAALGACTSEVEQFIVGVSMSCR 232
+KFIV+ G R+ +A + S + I+GV+ R
Sbjct: 53 IKFIVWHGSRKHNACIRTAYSIINNMIIGVTQGFR 87
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 28.7 bits (61), Expect = 0.58
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -2
Query: 477 PDAFEYFVRNPHSVFEIGDAVLKVDVVSEPRSLFARAQAFQRFCDV 340
PD F+RN +S+F+I A L V V E Q F R ++
Sbjct: 442 PDFVTTFLRNANSIFKIRGASLSVQGVDELPFKMLFMQLFDRILEI 487
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 28.7 bits (61), Expect = 0.58
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Frame = +2
Query: 8 SSRVYSSLIVKG--YRKQSKMSRVGRTRRTRVYDCN-YNKGESYYRPV----LDRLDGKA 166
S Y+ +I+ Y Q + + + ++ D + Y ++YY + LDR+ +
Sbjct: 340 SGAAYARIIIGSHDYMVQQHLLEIEQLQQIAAEDISLYGSADTYYERITQILLDRISSLS 399
Query: 167 PIVREPERESIRADVDN 217
V E +S++ D+DN
Sbjct: 400 ESVNEQNIKSLQTDIDN 416
>SPAC1805.16c |||purine nucleoside phosphorylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 315
Score = 27.9 bits (59), Expect = 1.0
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 310 KREVCRAGRVHL*SRTVHRGCFHVVQG 230
++ V A + H SRT+H GC+ V G
Sbjct: 190 RKLVYDAAKAHKVSRTIHEGCYAFVSG 216
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 27.5 bits (58), Expect = 1.3
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +1
Query: 220 HQERPARHGNTHDELFDFRGARAQRGRPLSSALEDDEFNEDITES 354
H P+RH + + + ++A R PL+ DDE N T S
Sbjct: 371 HTSMPSRHHSHRKKEKEKEKSKAPRVTPLTHKTNDDEANHSETSS 415
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 27.5 bits (58), Expect = 1.3
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +1
Query: 319 EDDEFNEDITESLKRLRASKKTSRFADDIDFENSVTNLENRMRISDKILE 468
ED+E+N T+ +++ SKK ++ ++ + L +MR + K LE
Sbjct: 390 EDEEYNNPSTQKTEKVSQSKKGAKVKEEKGLKKD-RKLPKKMRKAQKKLE 438
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 27.5 bits (58), Expect = 1.3
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Frame = +1
Query: 304 LSSALEDDEFNEDITESLKRLRASKKT------SRFADDIDFENSVT 426
L+ L+ +E+++ SL++ R K S F DD+DFENS++
Sbjct: 108 LNEKLDLEEWHQKFWWSLRKKRNLPKENSELDLSNFQDDLDFENSIS 154
>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 706
Score = 26.6 bits (56), Expect = 2.3
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 268 DFRGARAQRGRPLSSALEDDEFNEDITESLKRLRASKKTSRFADD 402
D R R R SS +DD+ + E + RA + SR+ DD
Sbjct: 148 DSRERDRDRDRTRSSRFDDDDDDRAPYEESRLSRAPSRASRYDDD 192
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 203 ADVDNRIKSALHDMETPTMNCSTSEVHAP 289
+D D+R+ + D+ET T ST+E +AP
Sbjct: 152 SDADSRLYKVV-DVETTTTKSSTAETNAP 179
>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 752
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -2
Query: 444 HSVFEIGDAVLKVDVVSEPRS 382
HS F +GDAVL+ V PRS
Sbjct: 301 HSAFCLGDAVLRRFVFRSPRS 321
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 4.1
Identities = 21/81 (25%), Positives = 32/81 (39%)
Frame = +1
Query: 226 ERPARHGNTHDELFDFRGARAQRGRPLSSALEDDEFNEDITESLKRLRASKKTSRFADDI 405
E A + N +D DF Q LS + F E +++ +T FADD
Sbjct: 306 ELDAENENENDPS-DFVLPNGQSNSDLSVEQDSAIFKEQKKMKIQKRMRELETQSFADDD 364
Query: 406 DFENSVTNLENRMRISDKILE 468
D + S+ + KIL+
Sbjct: 365 DLQQSIAMQRRLAQKRAKILK 385
>SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 361
Score = 25.4 bits (53), Expect = 5.4
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -2
Query: 525 VILQSTLGAADF--RVTNPDAFEYFVRNPHSVFEIGDAVLKVDVVSEPRSLFAR 370
++L S L A + R T+P F F+ S+ + +V + + S P +LF+R
Sbjct: 204 LVLPSILSPAFYSIRATHPQHFIRFIHTLSSLIKCTTSVHLICMCSVPSTLFSR 257
>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 959
Score = 25.0 bits (52), Expect = 7.1
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -2
Query: 504 GAADFRVTNPDAFEYFVRNPHSVFEIGDAVLKVDVVSE 391
G ADFRVTN + +V + E G+ + VV E
Sbjct: 557 GVADFRVTNVQVYAGYVLHT-GFLEYGNLTVNDSVVCE 593
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 24.6 bits (51), Expect = 9.4
Identities = 13/66 (19%), Positives = 32/66 (48%)
Frame = -1
Query: 331 IHRLPRQKREVCRAGRVHL*SRTVHRGCFHVVQGALDAVVDISSNTFAFGFANYRRFAVQ 152
I+ +PR ++ C AG +++ + + + V+Q +D V+ + F F + ++
Sbjct: 450 INMIPRYNQDNCSAGDIYILCFSENCWLYSVLQKTIDHWVNENVELFYKKFEILKSLLIE 509
Query: 151 TVKHGT 134
+ + T
Sbjct: 510 DIANST 515
>SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 411
Score = 24.6 bits (51), Expect = 9.4
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +1
Query: 283 RAQRGRPLSSALEDDEFNEDITESLKRL-RASKKTSRFADDIDFENSVTNLEN 438
+AQ R L S D + NED + KRL A K+ R D+ T +N
Sbjct: 18 KAQAERVLISVHADSDVNEDKEVARKRLGYALKEVERQITDLIVHEETTLTKN 70
>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 363
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = -1
Query: 265 TVHRGCFHVVQGALDAVVDISSNTFAFGFANYRRF 161
T+ CF +V G SNT N+R+F
Sbjct: 10 TLFLACFSLVSGVFGYSPMFGSNTIELNSKNFRKF 44
>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 278 VHAPSAADLSLLPWKTMNLTKTSQNR 355
V + SAAD ++ WK N + +QN+
Sbjct: 99 VASSSAADNEIVDWKANNSNEKAQNK 124
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,968,686
Number of Sequences: 5004
Number of extensions: 33980
Number of successful extensions: 124
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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