Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0953X.Seq
         (398 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    28   0.61 
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    26   1.9  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    26   2.5  
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz...    26   2.5  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    25   3.3  
SPAC652.01 |||BC10 family protein|Schizosaccharomyces pombe|chr ...    25   4.3  
SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4...    25   4.3  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   5.7  
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    25   5.7  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    25   5.7  
SPBC1347.06c |cki1||serine/threonine protein kinase Cki1|Schizos...    24   7.6  
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    24   7.6  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    24   7.6  

>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 27.9 bits (59), Expect = 0.61
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 143 CTCQVSLSFFLHNNRNVGLQ 202
           C C+VS   FL  N NVG+Q
Sbjct: 348 CICRVSFKEFLEKNDNVGVQ 367


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = -3

Query: 381 TRTHRYPRSPNIRTCIHFTLPRKKIIN 301
           T  + YP+      C  F  PR  I+N
Sbjct: 216 TNKYEYPQQSKFHECSQFASPRSSIVN 242


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 359 DHRTSELVFTLHYQEKRSSTCVIKNP 282
           +H+  EL+    Y E+  + C IKNP
Sbjct: 27  EHQFEELLVEKQYSEEHCAYCHIKNP 52


>SPBC646.09c |int6|yin6|translation initiation factor
           eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 10/46 (21%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -3

Query: 315 KKIINLCHQESITRKSPLTNFSTYIHTLIEQKQE*HCF--CKPTLR 184
           + ++ +  QE+     P+T+F + ++T ++ ++  HC   C+  L+
Sbjct: 295 RDLVRIISQENYEYSDPVTSFISALYTEVDFEKAQHCLRECEEVLK 340


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 74  NQLSSRKNGNPLLKFKTPQKHSN 6
           N L S+   NPLL+  TP+ + N
Sbjct: 551 NMLRSQFENNPLLQLHTPEDYEN 573


>SPAC652.01 |||BC10 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 108

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 153 KYPCPFFFIIIVMLV 197
           KYPCP+  II+ +L+
Sbjct: 33  KYPCPYCMIILGLLI 47


>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
           4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 382 NTHTPLSPITEHQNLYSLYTTKKKD 308
           N + PL+ +  H  LY LY+   KD
Sbjct: 196 NPNIPLTVLLHHVMLYDLYSNNLKD 220


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +2

Query: 71  DYFFLVSGKSWNLLDYVLKLYY 136
           DYFFL   K W  L Y L+  Y
Sbjct: 442 DYFFLYDLKLWKSLRYKLQELY 463


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = -1

Query: 395 YTCIQHAHTVIPDHRTSELVFTLHYQEKRS 306
           Y+C+ H HT + +   ++L+  L    ++S
Sbjct: 577 YSCVMHIHTAVEEVSFAKLLHKLDKTNRKS 606


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 318 RKKIINLCHQESITRKSPLTNFSTYIH 238
           RK++    H+++I  K     F++YIH
Sbjct: 719 RKEVQERKHEQAIKDKKAFAQFASYIH 745


>SPBC1347.06c |cki1||serine/threonine protein kinase
           Cki1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = -1

Query: 317 EKRSSTCVIKNPLQEKVLLRTFPHIFIR*LSKSKNNIASANQHYDYYEEKRTRILGR 147
           EK+ ST     PL+E  L   FP  F + +  ++N    A   YDY +   +++L R
Sbjct: 235 EKKQST-----PLRE--LCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLER 284


>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = -2

Query: 397 ITLAFNTHTPLSPITEHQNLYSLYTTKKKD 308
           I   FN+     P+T+H +++ ++T   +D
Sbjct: 128 IRCTFNSALRALPVTQHDDIWDMFTKYAED 157


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -3

Query: 324 LPRKKIINLCHQESITRKSPLTNFSTYIHTLIE 226
           L R +++ + HQ     K+    FST+++T+IE
Sbjct: 636 LLRARVLAVMHQFVNAIKAKSFEFSTFLYTVIE 668


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,579,230
Number of Sequences: 5004
Number of extensions: 30719
Number of successful extensions: 102
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)