Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0953X.Seq
         (398 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_02_0043 + 5964749-5966406,5966725-5966791,5967174-5967329,596...    31   0.44 
04_04_0226 + 23754513-23756914,23756972-23757050,23759296-23760153     27   5.5  

>05_02_0043 +
           5964749-5966406,5966725-5966791,5967174-5967329,
           5967782-5967865,5968020-5968073
          Length = 672

 Score = 30.7 bits (66), Expect = 0.44
 Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = +2

Query: 95  KSWNLLDYVLKLYYYRCTCQVSLSFFLH-NNRNVGLQKQCYSCFCSISV*IYVEKFVRGL 271
           K WN LDY+LKL     +CQ  L  +L   NR   L+K+  SC+ S  + +   KF++ L
Sbjct: 81  KKWNCLDYILKL-----SCQKGLKDYLTIINR---LEKRARSCY-SGDIKMNKRKFLQTL 131

Query: 272 FL 277
            L
Sbjct: 132 LL 133


>04_04_0226 + 23754513-23756914,23756972-23757050,23759296-23760153
          Length = 1112

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 95  YLKQEKNNQLSSRKNGNPLLKFKTPQKH 12
           YLK  KNN   S+ N N  +K+K  +KH
Sbjct: 422 YLKVPKNNNTQSQLNSNS-IKWKKQKKH 448


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,168,867
Number of Sequences: 37544
Number of extensions: 159769
Number of successful extensions: 374
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)