Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0953X.Seq
         (398 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z36282-2|CAA85288.3|  240|Caenorhabditis elegans Hypothetical pr...    29   0.93 
AF101305-5|AAF98597.2|  341|Caenorhabditis elegans Serpentine re...    29   1.2  
U50191-7|AAK31555.2|  454|Caenorhabditis elegans Hypothetical pr...    27   3.7  
AL034393-26|CAI59121.1|  936|Caenorhabditis elegans Hypothetical...    27   3.7  
AL034393-25|CAI59120.1|  797|Caenorhabditis elegans Hypothetical...    27   3.7  
AL034393-24|CAA22312.3|  833|Caenorhabditis elegans Hypothetical...    27   3.7  
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ...    27   3.7  
U23529-1|AAK39160.1|  269|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z54342-3|CAA91154.1|  394|Caenorhabditis elegans Hypothetical pr...    26   8.7  
Z34533-7|CAA84301.2|  369|Caenorhabditis elegans Hypothetical pr...    26   8.7  
U51999-8|AAA96090.2|  465|Caenorhabditis elegans Glutamate recep...    26   8.7  
AY158691-1|AAN41643.1|  369|Caenorhabditis elegans choline kinas...    26   8.7  
AF040653-4|ABS83854.1|  339|Caenorhabditis elegans Hypothetical ...    26   8.7  

>Z36282-2|CAA85288.3|  240|Caenorhabditis elegans Hypothetical
           protein K10G9.2 protein.
          Length = 240

 Score = 29.5 bits (63), Expect = 0.93
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
 Frame = -1

Query: 380 HAHTVIPDHRTSELVFTLHYQEKRSSTCVIKNPLQE-KVLL----RTFPHIFIR*LSKSK 216
           H H+     R S +   LH + KRS++    N  Q   V L    R  PH F+      +
Sbjct: 104 HRHSASGSRRQSRVYSNLHSKRKRSNSLTNYNKGQSLSVSLPPSARHTPHRFVNEEDAFR 163

Query: 215 NNIASANQH 189
           N++AS++ H
Sbjct: 164 NSMASSDSH 172


>AF101305-5|AAF98597.2|  341|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 3 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -3

Query: 396 LHLHSTRTHRYPRSPNIRTCIHFTL 322
           LH HST T RY  S N+RT   F +
Sbjct: 217 LHKHSTLTERYQISENLRTSTMFRI 241


>U50191-7|AAK31555.2|  454|Caenorhabditis elegans Hypothetical
           protein T14B4.9 protein.
          Length = 454

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 150 AKYPCPFFFIIIVMLVCRSNVILAFAQLAYEYMWKS 257
           +KY   FFF+++ MLVC + VI + A       W S
Sbjct: 3   SKYSRTFFFLLLTMLVC-TIVIFSMAPRITMSFWTS 37


>AL034393-26|CAI59121.1|  936|Caenorhabditis elegans Hypothetical
           protein Y18D10A.7c protein.
          Length = 936

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +3

Query: 150 AKYPCPFFFIIIVMLVCRS-NVILAF 224
           AKYP PF  I +++ +C S  +IL F
Sbjct: 43  AKYPWPFIIIPLIITICLSMGIILNF 68


>AL034393-25|CAI59120.1|  797|Caenorhabditis elegans Hypothetical
           protein Y18D10A.7b protein.
          Length = 797

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +3

Query: 150 AKYPCPFFFIIIVMLVCRS-NVILAF 224
           AKYP PF  I +++ +C S  +IL F
Sbjct: 27  AKYPWPFIIIPLIITICLSMGIILNF 52


>AL034393-24|CAA22312.3|  833|Caenorhabditis elegans Hypothetical
           protein Y18D10A.7a protein.
          Length = 833

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +3

Query: 150 AKYPCPFFFIIIVMLVCRS-NVILAF 224
           AKYP PF  I +++ +C S  +IL F
Sbjct: 43  AKYPWPFIIIPLIITICLSMGIILNF 68


>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
            protein Y32H12A.8 protein.
          Length = 3901

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -2

Query: 361  PITEHQNLYSLYTT-KKKDHQLVSSRIHYKKKSSYE 257
            P T H++L+S  ++  + + + VS+R+H   KS YE
Sbjct: 2577 PYTWHEDLHSAISSLHRSELRRVSNRVHLIMKSEYE 2612


>U23529-1|AAK39160.1|  269|Caenorhabditis elegans Hypothetical
           protein C15B12.2 protein.
          Length = 269

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 50  HFFWTIIDYF-FLVSGKSWNLLDYVLKLYYYRC 145
           H FW I+ +  +LV    W LL ++  LY+Y C
Sbjct: 60  HMFWYILTFITYLV----WTLLLWIPCLYHYTC 88


>Z54342-3|CAA91154.1|  394|Caenorhabditis elegans Hypothetical
           protein C08H9.6 protein.
          Length = 394

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 153 KYPCPFFFIIIVMLVCRSNVILAFAQLAYEYMWK 254
           KY C  F +I ++L+  + V    +++ YEY  K
Sbjct: 10  KYFCKIFLLITLVLITCAMVAYGLSKINYEYSSK 43


>Z34533-7|CAA84301.2|  369|Caenorhabditis elegans Hypothetical
           protein B0285.9 protein.
          Length = 369

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 20  AEF*ILIEDFHFFWTIIDYFFLVSGKSWNLLDY 118
           AE   LI++  FFW + + F+ +S    +LL +
Sbjct: 303 AEVKALIQECQFFWPLTNLFWALSAMKHSLLKF 335


>U51999-8|AAA96090.2|  465|Caenorhabditis elegans Glutamate receptor
           family (ampa)protein 7 protein.
          Length = 465

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 174 FIIIVMLVCRSNVILAFAQLAYEYMWKS 257
           FI+I+  +  S V LAF    Y+Y+W +
Sbjct: 435 FIVILAGIALSIVTLAFEYYYYKYVWNT 462


>AY158691-1|AAN41643.1|  369|Caenorhabditis elegans choline kinase
           CKB-2 protein.
          Length = 369

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 20  AEF*ILIEDFHFFWTIIDYFFLVSGKSWNLLDY 118
           AE   LI++  FFW + + F+ +S    +LL +
Sbjct: 303 AEVKALIQECQFFWPLTNLFWALSAMKHSLLKF 335


>AF040653-4|ABS83854.1|  339|Caenorhabditis elegans Hypothetical
           protein K05F6.12 protein.
          Length = 339

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 397 ITLAFNTHTPLSPITEHQNLYSLYTTKK 314
           IT  F T TP++  T HQN+  L  + +
Sbjct: 170 ITKLFTTFTPINDFTLHQNVSQLLNSSQ 197


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,707,128
Number of Sequences: 27780
Number of extensions: 171421
Number of successful extensions: 475
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)