Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0952.Seq
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|...    62   1e-10
SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c...    31   0.23 
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    28   1.2  
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M...    28   1.2  
SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyc...    26   6.5  
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.5  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    26   6.5  
SPCC16C4.11 |pef1||Pho85/PhoA-like cyclin-dependent kinase Pef1|...    25   8.6  

>SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 385

 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 29/60 (48%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
 Frame = +1

Query: 328 DIPDGFLCPPVPGRADYIHHLADLLAEASGTIPANASI-LDIGVGANCIYPLIGVHEYGW 504
           + P+  LCP VP RA YI ++ DLL+  SG       I LDIG GA+CIYPL+G   Y +
Sbjct: 41  EFPENRLCPMVPNRATYIRYIHDLLSSTSGQKDKKRIIGLDIGTGASCIYPLLGCRMYSY 100


>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 354 WAEKTVGDIPVRYGVKMGQQRLIERLHRQRI 262
           WA+KT   I    GV + +Q++IE LH+  +
Sbjct: 195 WADKTTSCIYEHLGVTVEEQKMIENLHKHSV 225


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 403 PVNRQGDEYNPPGPVLVGRENRRGYPSSL 317
           P+ RQ ++YN    +LV ++   G+PS L
Sbjct: 467 PIARQYEDYNTLEFILVDKDGNNGFPSDL 495


>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 609

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 397 LLAEASGTIPANASILDIGVGANCIYPLIGVHEY 498
           +LAEASGT+P    +++  VG        G  EY
Sbjct: 235 ILAEASGTVPGTVEVIEPAVGTVTTTTYSGSVEY 268



 Score = 25.8 bits (54), Expect = 6.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 382 HHLADLLAEASGTIPANASILD 447
           H     LAEASGT+P    +++
Sbjct: 122 HEFTTTLAEASGTVPGTVEVVE 143


>SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 26  SHVKVLGNDKRSQIFTLSRYAGILRRCLKENAMSAQKPGL 145
           +HV V  +D  + +F L RY  +  +C K    +A K  L
Sbjct: 45  AHVYVSEHDYSNGVFLLFRYCELFMKCQKHPDAAAYKKEL 84


>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 56  RSQIFTLSRYAGILRRCLKENAMSAQKPGLH 148
           +SQ+F L +Y G     L+   +++QKP  H
Sbjct: 320 QSQLFELMQYTGFWLVQLRTKPLTSQKPDWH 350


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 389 LPIYWQKQAEQFQRMP 436
           +P+YWQ++  +FQ  P
Sbjct: 49  IPLYWQQRGNEFQASP 64


>SPCC16C4.11 |pef1||Pho85/PhoA-like cyclin-dependent kinase
           Pef1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 288

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -3

Query: 616 PLSFCRRRRMARLSPGLELIIACALLNAWLLVS 518
           PL     RRM RL P L      AL +AW L +
Sbjct: 256 PLGLDLLRRMLRLQPELRTTGQDALQHAWFLTA 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,198,933
Number of Sequences: 5004
Number of extensions: 66317
Number of successful extensions: 196
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)