Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0952.Seq
         (744 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0159 - 1109249-1109280,1109334-1109397,1109524-1109627,111...    71   1e-12
10_07_0065 - 12527642-12528178,12531443-12531718                       31   0.73 
05_06_0150 - 25994562-25995980                                         28   6.8  
04_04_1638 + 34974369-34974764                                         28   9.0  
02_05_1219 + 35011571-35011897,35012008-35013780,35013915-350140...    28   9.0  
01_01_0320 - 2578911-2579144,2579243-2579455,2579580-2579858,257...    28   9.0  

>02_01_0159 -
           1109249-1109280,1109334-1109397,1109524-1109627,
           1110270-1110373,1110450-1110840,1110956-1111161,
           1111650-1111885
          Length = 378

 Score = 70.9 bits (166), Expect = 1e-12
 Identities = 36/67 (53%), Positives = 44/67 (65%), Gaps = 6/67 (8%)
 Frame = +1

Query: 322 NWDIPDGFLCPPVPGRADYIHHLADLLAEASGTIP----ANASI--LDIGVGANCIYPLI 483
           NW IPDG LCP VP R++YIH + DLL  +S  IP    +N ++   DIG GANCIYPL+
Sbjct: 78  NWWIPDGQLCPTVPNRSNYIHWIEDLL--SSDLIPPISSSNKTVRGFDIGTGANCIYPLL 135

Query: 484 GVHEYGW 504
           G    GW
Sbjct: 136 GASLLGW 142



 Score = 31.5 bits (68), Expect = 0.73
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +2

Query: 128 AQKPGLHPRNRHHSRY-DLATLCQVNPELRQFLTLTPAGEQSV 253
           ++ P +HPRNR+ +   D A+L  + P    F++++  G  S+
Sbjct: 13  SEAPAIHPRNRYAAAAPDFASLASLYPSFAPFVSVSRGGRASI 55



 Score = 31.1 bits (67), Expect = 0.97
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 618 AIFNGIIHKNEQYDATLCNPPFHDSAAAA 704
           +I  G++  +E +D  +CNPPF +S   A
Sbjct: 210 SILLGVVKDSESFDFCMCNPPFFESIEEA 238


>10_07_0065 - 12527642-12528178,12531443-12531718
          Length = 270

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 89  GILRRCLKENAMSAQKPGLHPRNRHHSRYDLATLCQVNPELRQ 217
           G+L RC+K  A +A   G    + HH+   L     V P++R+
Sbjct: 125 GVLSRCVKAEAAAAAANGRRHHHHHHTTMLLMPGADVEPDVRE 167


>05_06_0150 - 25994562-25995980
          Length = 472

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 161 HHSRYDLATLCQVNPELRQFLTLTPA 238
           HH + +L TL   NP LR+FL   PA
Sbjct: 78  HHVKRNLDTLRLANPVLREFLRSLPA 103


>04_04_1638 + 34974369-34974764
          Length = 131

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +3

Query: 582 RAIRLRRQKESGAIFNGIIHKNEQYDATLCNPPFHDSAAAARAGSERKRRKLGA 743
           +A   R Q   GA+    + +N   + ++  PP H     A A S+RKR+   A
Sbjct: 56  QATSRRHQTSHGAVAGRGLRRNR--NTSMFAPPAHGEIRGAHAASKRKRKSNAA 107


>02_05_1219 +
           35011571-35011897,35012008-35013780,35013915-35014068,
           35014158-35014801
          Length = 965

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +3

Query: 333 PRRFSLPTSTGPGGLYSSPCR-FTGRSKRNNSSECQHSGYRRWCE 464
           P++ S        G +S PC  F+ ++ R NSS  +H G    CE
Sbjct: 197 PKKDSKGHPNQKAGTHSEPCSGFSDQTLRMNSSRNKHQGKEPSCE 241


>01_01_0320 -
           2578911-2579144,2579243-2579455,2579580-2579858,
           2579961-2580050,2580258-2580439,2581366-2582470
          Length = 700

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +1

Query: 334 PDG-FLCPPVPGRADYIHHLADLLAEASG 417
           PDG F CP  PG+    + L DLL  A G
Sbjct: 69  PDGTFRCPFCPGKKKQDYKLKDLLQHADG 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,086,965
Number of Sequences: 37544
Number of extensions: 525787
Number of successful extensions: 1468
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1467
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)