Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0952.Seq
         (744 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC050603-1|AAH50603.1|  562|Homo sapiens methyltransferase 10 do...    53   1e-06
BC001213-1|AAH01213.1|  224|Homo sapiens METT10D protein protein.      53   1e-06
AL832612-1|CAD89999.2|  425|Homo sapiens hypothetical protein pr...    53   1e-06
AK027410-1|BAB55094.1|  504|Homo sapiens protein ( Homo sapiens ...    53   1e-06
M32215-1|AAA61236.1|  764|Homo sapiens thyroid stimulatory hormo...    30   7.6  
M31774-1|AAA36783.1|  764|Homo sapiens protein ( Human thyrotrop...    30   7.6  
AY429111-1|AAR07906.1|  764|Homo sapiens thyroid stimulating hor...    30   7.6  
AC010582-1|AAF26775.1|  533|Homo sapiens TSHR protein.                 30   7.6  
AB209207-1|BAD92444.1|  770|Homo sapiens thyroid stimulating hor...    30   7.6  

>BC050603-1|AAH50603.1|  562|Homo sapiens methyltransferase 10
           domain containing protein.
          Length = 562

 Score = 52.8 bits (121), Expect = 1e-06
 Identities = 26/59 (44%), Positives = 32/59 (54%)
 Frame = +1

Query: 328 DIPDGFLCPPVPGRADYIHHLADLLAEASGTIPANASILDIGVGANCIYPLIGVHEYGW 504
           DIP   L P VP R +YIH + DL+             +DIG GA+CIYPL+G    GW
Sbjct: 69  DIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGW 127


>BC001213-1|AAH01213.1|  224|Homo sapiens METT10D protein protein.
          Length = 224

 Score = 52.8 bits (121), Expect = 1e-06
 Identities = 26/59 (44%), Positives = 32/59 (54%)
 Frame = +1

Query: 328 DIPDGFLCPPVPGRADYIHHLADLLAEASGTIPANASILDIGVGANCIYPLIGVHEYGW 504
           DIP   L P VP R +YIH + DL+             +DIG GA+CIYPL+G    GW
Sbjct: 69  DIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGW 127


>AL832612-1|CAD89999.2|  425|Homo sapiens hypothetical protein
           protein.
          Length = 425

 Score = 52.8 bits (121), Expect = 1e-06
 Identities = 26/59 (44%), Positives = 32/59 (54%)
 Frame = +1

Query: 328 DIPDGFLCPPVPGRADYIHHLADLLAEASGTIPANASILDIGVGANCIYPLIGVHEYGW 504
           DIP   L P VP R +YIH + DL+             +DIG GA+CIYPL+G    GW
Sbjct: 69  DIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGW 127


>AK027410-1|BAB55094.1|  504|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14504 fis, clone NT2RM1000272. ).
          Length = 504

 Score = 52.8 bits (121), Expect = 1e-06
 Identities = 26/59 (44%), Positives = 32/59 (54%)
 Frame = +1

Query: 328 DIPDGFLCPPVPGRADYIHHLADLLAEASGTIPANASILDIGVGANCIYPLIGVHEYGW 504
           DIP   L P VP R +YIH + DL+             +DIG GA+CIYPL+G    GW
Sbjct: 69  DIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGW 127


>M32215-1|AAA61236.1|  764|Homo sapiens thyroid stimulatory hormone
           receptor protein.
          Length = 764

 Score = 30.3 bits (65), Expect = 7.6
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 577 SPGLELIIACALLNAWLLVSLPVNASHIHVRQSADKYSSH 458
           S GLE +      N W L  LP++ S +H+ ++   Y SH
Sbjct: 243 SKGLEHLKELIARNTWTLKKLPLSLSFLHLTRADLSYPSH 282


>M31774-1|AAA36783.1|  764|Homo sapiens protein ( Human thyrotropin
           receptor (TSH) mRNA, complete cds. ).
          Length = 764

 Score = 30.3 bits (65), Expect = 7.6
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 577 SPGLELIIACALLNAWLLVSLPVNASHIHVRQSADKYSSH 458
           S GLE +      N W L  LP++ S +H+ ++   Y SH
Sbjct: 243 SKGLEHLKELIARNTWTLKKLPLSLSFLHLTRADLSYPSH 282


>AY429111-1|AAR07906.1|  764|Homo sapiens thyroid stimulating
           hormone receptor protein.
          Length = 764

 Score = 30.3 bits (65), Expect = 7.6
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 577 SPGLELIIACALLNAWLLVSLPVNASHIHVRQSADKYSSH 458
           S GLE +      N W L  LP++ S +H+ ++   Y SH
Sbjct: 243 SKGLEHLKELIARNTWTLKKLPLSLSFLHLTRADLSYPSH 282


>AC010582-1|AAF26775.1|  533|Homo sapiens TSHR protein.
          Length = 533

 Score = 30.3 bits (65), Expect = 7.6
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 577 SPGLELIIACALLNAWLLVSLPVNASHIHVRQSADKYSSH 458
           S GLE +      N W L  LP++ S +H+ ++   Y SH
Sbjct: 12  SKGLEHLKELIARNTWTLKKLPLSLSFLHLTRADLSYPSH 51


>AB209207-1|BAD92444.1|  770|Homo sapiens thyroid stimulating
           hormone receptor variant protein.
          Length = 770

 Score = 30.3 bits (65), Expect = 7.6
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 577 SPGLELIIACALLNAWLLVSLPVNASHIHVRQSADKYSSH 458
           S GLE +      N W L  LP++ S +H+ ++   Y SH
Sbjct: 249 SKGLEHLKELIARNTWTLKKLPLSLSFLHLTRADLSYPSH 288


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,190,033
Number of Sequences: 237096
Number of extensions: 2800699
Number of successful extensions: 6063
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6055
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8903143626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)