Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0952.Seq
         (744 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058680-1|AAL13909.1|  305|Drosophila melanogaster LD39460p pro...    40   0.004
AE013599-2012|AAF58169.2|  305|Drosophila melanogaster CG7544-PA...    40   0.004
AE013599-762|AAF59007.1|  746|Drosophila melanogaster CG8181-PA ...    30   2.9  

>AY058680-1|AAL13909.1|  305|Drosophila melanogaster LD39460p
           protein.
          Length = 305

 Score = 39.9 bits (89), Expect = 0.004
 Identities = 22/59 (37%), Positives = 31/59 (52%)
 Frame = +1

Query: 328 DIPDGFLCPPVPGRADYIHHLADLLAEASGTIPANASILDIGVGANCIYPLIGVHEYGW 504
           D   G L P +  R +YI  L DL+   +     N   +DIG G++CIY L+G  + GW
Sbjct: 74  DFAPGSLVPTLALRLNYILWLEDLMEPLN---LQNIRGIDIGCGSSCIYSLLGAKKNGW 129


>AE013599-2012|AAF58169.2|  305|Drosophila melanogaster CG7544-PA
           protein.
          Length = 305

 Score = 39.9 bits (89), Expect = 0.004
 Identities = 22/59 (37%), Positives = 31/59 (52%)
 Frame = +1

Query: 328 DIPDGFLCPPVPGRADYIHHLADLLAEASGTIPANASILDIGVGANCIYPLIGVHEYGW 504
           D   G L P +  R +YI  L DL+   +     N   +DIG G++CIY L+G  + GW
Sbjct: 74  DFAPGSLVPTLALRLNYILWLEDLMEPLN---LQNIRGIDIGCGSSCIYSLLGAKKNGW 129


>AE013599-762|AAF59007.1|  746|Drosophila melanogaster CG8181-PA
           protein.
          Length = 746

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = -2

Query: 671 TQGRVVLLVFMDDAVKNRPTLFLPTQTNGAVKPRIRTDNRLRTA*RLAAGFTT 513
           T   +   VF D+  KNR T  LP +T  A +PR +    +     L A  TT
Sbjct: 346 TTSTITTTVFKDELPKNRTTTRLPERTTQAPRPRPKPTGEIVKVPALLAEPTT 398


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,944,698
Number of Sequences: 53049
Number of extensions: 817799
Number of successful extensions: 2088
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2088
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3375989364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)