Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0952.Seq
         (744 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47357-1|CAA87421.2|  479|Caenorhabditis elegans Hypothetical pr...    46   2e-05
Z81039-2|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical pr...    31   0.65 
M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger pro...    31   0.65 
U13019-3|AAC24452.2|  713|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z49130-8|CAA88973.1| 1490|Caenorhabditis elegans Hypothetical pr...    28   8.0  
Z49129-3|CAA88963.1| 1490|Caenorhabditis elegans Hypothetical pr...    28   8.0  
AF003739-5|AAK84629.2|  422|Caenorhabditis elegans Temporarily a...    28   8.0  

>Z47357-1|CAA87421.2|  479|Caenorhabditis elegans Hypothetical
           protein ZK1128.2a protein.
          Length = 479

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 22/59 (37%), Positives = 33/59 (55%)
 Frame = +1

Query: 328 DIPDGFLCPPVPGRADYIHHLADLLAEASGTIPANASILDIGVGANCIYPLIGVHEYGW 504
           +IP G L P VP + +Y   + DLL   +  +  N   +DIG G +CI+ LIG  ++ W
Sbjct: 69  EIPPGHLVPRVPQKLNYCLLIDDLLK--ANKLTKNVIGIDIGTGTSCIHALIGARQFNW 125


>Z81039-2|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical protein
            C25D7.3 protein.
          Length = 2150

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +1

Query: 610  RVGRFLTASSIKTSNTTRPCVTRHSTIPPLRHGQVVSVNA 729
            R GR  TASS+KTS + R  +++++ +P +R       NA
Sbjct: 1607 RTGRESTASSVKTSRSKRLFLSKNNPVPRMRIQSQAGTNA 1646


>M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger protein
            protein.
          Length = 2150

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +1

Query: 610  RVGRFLTASSIKTSNTTRPCVTRHSTIPPLRHGQVVSVNA 729
            R GR  TASS+KTS + R  +++++ +P +R       NA
Sbjct: 1607 RTGRESTASSVKTSRSKRLFLSKNNPVPRMRIQSQAGTNA 1646


>U13019-3|AAC24452.2|  713|Caenorhabditis elegans Hypothetical
           protein T12A2.15a protein.
          Length = 713

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 737 QFTAFTLTTCPCRSGGIVEWRVTQGRVVLLVFMDDA 630
           +FT   +   PCR GGI  +    GR  ++V MD A
Sbjct: 129 KFTKMDMGDIPCRVGGIKVYTTNVGRDRIIVDMDVA 164


>Z49130-8|CAA88973.1| 1490|Caenorhabditis elegans Hypothetical
           protein T06D8.10 protein.
          Length = 1490

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
 Frame = -3

Query: 550 CALLNAWLLVSLP-VNASHIHVRQSADKYSSHQRRYPECWHSLELF---RLLLPVNRQGD 383
           CAL     +  LP V A H    +  ++ + + R     W   +L+   R ++    Q  
Sbjct: 367 CALSGTDEVNILPSVAALHTVFIRHHNRIADNLRSINRHWTDDKLYEEARKIVAAQVQHI 426

Query: 382 EYNPPGPVLVGRENRRGYPSSL 317
            YN   PVL+GREN R Y  +L
Sbjct: 427 TYNEFLPVLLGRENMRNYGLNL 448


>Z49129-3|CAA88963.1| 1490|Caenorhabditis elegans Hypothetical
           protein T06D8.10 protein.
          Length = 1490

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
 Frame = -3

Query: 550 CALLNAWLLVSLP-VNASHIHVRQSADKYSSHQRRYPECWHSLELF---RLLLPVNRQGD 383
           CAL     +  LP V A H    +  ++ + + R     W   +L+   R ++    Q  
Sbjct: 367 CALSGTDEVNILPSVAALHTVFIRHHNRIADNLRSINRHWTDDKLYEEARKIVAAQVQHI 426

Query: 382 EYNPPGPVLVGRENRRGYPSSL 317
            YN   PVL+GREN R Y  +L
Sbjct: 427 TYNEFLPVLLGRENMRNYGLNL 448


>AF003739-5|AAK84629.2|  422|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 96 protein.
          Length = 422

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = +2

Query: 95  LRRCLKENAMSAQKPGLHPRNRH 163
           L  CL EN  S QK  L PR RH
Sbjct: 296 LEECLTENTRSFQKFKLRPRARH 318


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,114,767
Number of Sequences: 27780
Number of extensions: 389310
Number of successful extensions: 1040
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)