Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0952.Seq
         (744 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   2.3  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   5.3  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   7.0  
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    21   9.2  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 14/48 (29%), Positives = 19/48 (39%)
 Frame = +2

Query: 119 AMSAQKPGLHPRNRHHSRYDLATLCQVNPELRQFLTLTPAGEQSVALP 262
           A    +PG+HPR +  ++        V   L Q     P G  S  LP
Sbjct: 213 ASQQSQPGMHPRQQQQAQQHQGV---VTSPLSQQQQAAPQGAASANLP 257


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II
          large subunit protein.
          Length = 296

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 73 GKYLAAFIIPQNLNM 29
          GK +++ IIP N+NM
Sbjct: 49 GKQISSLIIPGNVNM 63


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 126 PPRNRGCIRATVITAATIS 182
           PPR  G +  +VI AAT S
Sbjct: 398 PPRGPGGVPTSVIQAATSS 416


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 78 DRVNIWLRLSFPKTLTWLWF 19
          +R+N+ L LS  +T   +WF
Sbjct: 37 ERLNLALSLSLTETQVKIWF 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,181
Number of Sequences: 438
Number of extensions: 4516
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)