Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0944.Seq
(731 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|... 50 3e-07
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo... 50 5e-07
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 47 2e-06
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe... 46 6e-06
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc... 42 9e-05
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha... 36 0.005
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha... 31 0.17
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 29 0.68
SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces pom... 28 1.6
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 27 3.6
SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|c... 26 6.4
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo... 26 6.4
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 8.4
>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 503
Score = 50.4 bits (115), Expect = 3e-07
Identities = 29/59 (49%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Frame = +1
Query: 553 DYIFYTGGTNVGRIVYEAA-TKNLTPVTLELGGKSPVYVDNTVDIVVTAKRILWGKFIN 726
D + +TG T VGR+V AA + NL VTLELGGKSP V N D+ A +G F N
Sbjct: 241 DKVAFTGSTGVGRMVMRAAASSNLKKVTLELGGKSPNIVFNDADLDSAAVWTNYGIFYN 299
Score = 39.1 bits (87), Expect = 6e-04
Identities = 17/42 (40%), Positives = 27/42 (64%)
Frame = +2
Query: 314 NDPYGVVLVIGAWNYPLQLLLLPMAGAIAAGNTVIVKPSELS 439
++P GV I WN+P + +A A+A GNT+I+K +EL+
Sbjct: 158 HEPIGVCGQIIPWNFPFLMCAWKIAPAVACGNTIILKTAELT 199
>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 500
Score = 49.6 bits (113), Expect = 5e-07
Identities = 23/49 (46%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Frame = +2
Query: 320 PYGVVLVIGAWNYPLQLLLLPMAGAIAAGNTVIVKPSELSV-ACSNFVV 463
P GV+ VI WN+PL++ L + AIA+GN V++KPSEL+ +C F +
Sbjct: 162 PRGVIGVITPWNFPLKMALWKLVPAIASGNCVVLKPSELAPWSCLEFAL 210
Score = 47.2 bits (107), Expect = 2e-06
Identities = 20/57 (35%), Positives = 32/57 (56%)
Frame = +1
Query: 556 YIFYTGGTNVGRIVYEAATKNLTPVTLELGGKSPVYVDNTVDIVVTAKRILWGKFIN 726
Y+ +TG G+ + AA +N+ P+TLELGGKSP+ + D+ + + F N
Sbjct: 244 YLAFTGSLATGKKIMHAAAENIVPLTLELGGKSPLIICEDADLSLAIPSAAFAIFFN 300
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 47.2 bits (107), Expect = 2e-06
Identities = 21/61 (34%), Positives = 33/61 (54%)
Frame = +2
Query: 257 KPEHPPKGFVNILDEVVIYNDPYGVVLVIGAWNYPLQLLLLPMAGAIAAGNTVIVKPSEL 436
+P P + + +P GV+ + +WNYPL L P+ A+ AGN ++VK SEL
Sbjct: 106 RPTKRPNSLLTSYKGGYVKYEPLGVIAALVSWNYPLHNALGPIISALFAGNAIVVKGSEL 165
Query: 437 S 439
+
Sbjct: 166 T 166
Score = 36.3 bits (80), Expect = 0.005
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +1
Query: 556 YIFYTGGTNVGRIVYEAATKNLTPVTLELGGKSP 657
+I + G + ++V +A K LTP+ LELGGK P
Sbjct: 212 HITFIGSQPIAKLVAASAAKQLTPLCLELGGKDP 245
>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 46.0 bits (104), Expect = 6e-06
Identities = 26/58 (44%), Positives = 29/58 (50%)
Frame = +1
Query: 553 DYIFYTGGTNVGRIVYEAATKNLTPVTLELGGKSPVYVDNTVDIVVTAKRILWGKFIN 726
D I +TG T VG IV + A NL VTLE GGKSP V D+ K G N
Sbjct: 235 DKIAFTGSTKVGVIVQQLAASNLKAVTLECGGKSPFLVFEDADLDQAVKWAALGIMYN 292
Score = 38.7 bits (86), Expect = 8e-04
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = +2
Query: 320 PYGVVLVIGAWNYPLQLLLLPMAGAIAAGNTVIVKPSE 433
P GV I WNYPL + +A A+AAGN +I+K +E
Sbjct: 154 PIGVCGQIVPWNYPLNMAGWKIAPALAAGNCIIIKSAE 191
>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 41.9 bits (94), Expect = 9e-05
Identities = 16/48 (33%), Positives = 29/48 (60%)
Frame = +2
Query: 287 NILDEVVIYNDPYGVVLVIGAWNYPLQLLLLPMAGAIAAGNTVIVKPS 430
N + ++ P GVV +I WN+P ++ + A+AAG TV+++P+
Sbjct: 148 NPQNRIITIKQPVGVVGIITPWNFPAAMITRKVGAALAAGCTVVIRPA 195
Score = 41.5 bits (93), Expect = 1e-04
Identities = 19/54 (35%), Positives = 32/54 (59%)
Frame = +1
Query: 559 IFYTGGTNVGRIVYEAATKNLTPVTLELGGKSPVYVDNTVDIVVTAKRILWGKF 720
+ +TG TNVG+I+ + ++ L ++LELGG +P V D+ A ++ KF
Sbjct: 243 VSFTGSTNVGKILAKQSSSTLKKLSLELGGNAPFIVFEDADLEKAADALMACKF 296
>SPAC139.05 |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 493
Score = 36.3 bits (80), Expect = 0.005
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = +1
Query: 559 IFYTGGTNVGRIVYEAATKNLTPVTLELGGKSP--VYVDNTVDIVV 690
+ +TG TNVG+I+ + + V++ELGG +P V+ D +D V
Sbjct: 238 VSFTGSTNVGKILMGQSASTIKKVSMELGGNAPFIVFPDFPIDQAV 283
Score = 31.9 bits (69), Expect = 0.097
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 302 VVIYNDPYGVVLVIGAWNYPLQLLLLPMAGAIAAGNTVIVKPS 430
++ P GV +I WN+P ++ A+AAG T I P+
Sbjct: 148 LISIKQPVGVSALITPWNFPAAMIARKGGAALAAGCTAIFLPA 190
>SPBC29A3.05 |||chromatin remodeling complex
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 139
Score = 31.1 bits (67), Expect = 0.17
Identities = 19/74 (25%), Positives = 39/74 (52%)
Frame = +3
Query: 30 AVQKARDTFNRGTTRPIEWRRQQLKNLLRMYEENQNVMVEALHKDLRRSKMEAILLEVDY 209
AVQK + R P+ RQ +NL + ++N + + + KDL + ++ + + V
Sbjct: 9 AVQKRKKQKQRSVVDPVTRERQLKRNLADLEKDNFSDIRFEIPKDLLQRRV--LPISVRR 66
Query: 210 LITDLRNTLHYLDE 251
+++ + ++YLDE
Sbjct: 67 ILSSRKTFVNYLDE 80
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1283
Score = 29.1 bits (62), Expect = 0.68
Identities = 22/65 (33%), Positives = 33/65 (50%)
Frame = -3
Query: 591 STDVSASSVEDVVKPLFEQLSGLLRTSLNTMKASLSKYFGRFSTTKFEQATDSSLGFTIT 412
ST + S+++ + P +S L S+N ASLSK + T E S+G+T T
Sbjct: 169 STYLPNSTIDLSILP-HSTISTLSTVSINDTSASLSKTTSPTAGTITETIVSGSVGYTST 227
Query: 411 VFPAA 397
FPA+
Sbjct: 228 -FPAS 231
>SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 27.9 bits (59), Expect = 1.6
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +3
Query: 102 KNLLRMYEENQNVMVEALHKDLRRSKMEAILLEVDYLITDLRNTLHYLD 248
KN ++ E+ + + EAL K L +S++ + E Y +TD Y D
Sbjct: 165 KNSQKLLEDEEFAVTEALMKSLLKSRVPSKPTEELYQLTDQEAYFRYSD 213
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -2
Query: 430 AGFHDNRVPGSDGSGHRQKQELQGIVPG 347
+G H V G G+ H + EL G PG
Sbjct: 323 SGTHGTHVAGIIGANHPETPELNGAAPG 350
>SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 521
Score = 25.8 bits (54), Expect = 6.4
Identities = 23/103 (22%), Positives = 38/103 (36%)
Frame = +2
Query: 77 DRMAPSAAQEFVKNVRGKPKRHGGGPTQGSETKQNGSHSTRSRLLDH*FEEHSALFGRVA 256
DR+ + K V G + G T + + S + L+D F H GR+
Sbjct: 210 DRIGKPYIKVDPKKVIGIVEADYGDITCANSPQDETSQAIAGHLVD--FFHHEVSVGRLP 267
Query: 257 KPEHPPKGFVNILDEVVIYNDPYGVVLVIGAWNYPLQLLLLPM 385
K HP + + + +I + + W LQ LP+
Sbjct: 268 KNLHPLQSGIGNIANAIIGGLAHSPFKDLEVWTEVLQDTFLPL 310
>SPBC215.01 ||SPBC3B9.20|GTPase activating
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 25.8 bits (54), Expect = 6.4
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 105 NLLRMYEENQNVMVEALHKDLRRSKMEAILLEVDYLITDLRNTL 236
+LL++Y + +E + KDL RS E + + I LRN L
Sbjct: 249 HLLKVYSGQTSFSLEEIEKDLGRSLPEYPAYQNEEGINALRNVL 292
>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 578
Score = 25.4 bits (53), Expect = 8.4
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +2
Query: 35 PKSSRHFQSRHNQADRMAP--SAAQEFVKNVRGKPKRHGGGPTQ 160
PKSS HF RH DR S ++ + +N K K+ GP Q
Sbjct: 492 PKSSHHFDERHG-GDRHEKNLSNSRRYSRNKFHK-KKQSSGPFQ 533
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,151,416
Number of Sequences: 5004
Number of extensions: 65971
Number of successful extensions: 210
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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