Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0943X.Seq
         (436 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    32   0.044
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ...    28   0.71 
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    26   2.9  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   2.9  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    25   3.8  
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    24   8.8  

>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 31.9 bits (69), Expect = 0.044
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 289 FWGRGAVKH*IGTLKGAPDLELDGESRRTW 378
           +WGR   +H +G L+G P+L        +W
Sbjct: 227 YWGRAIARHFVGQLRGGPNLTYSSVQNASW 256


>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 27.9 bits (59), Expect = 0.71
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 250 PDRRFFAL*RWSPRSLIVDSCSK 182
           PD +FF +  W P  L + SC K
Sbjct: 220 PDAKFFGIFDWDPHGLCIYSCFK 242


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 217 SPRSLIVDSCSKLEQHSTLSRSILLI 140
           SP +L   +CS L  HST    + L+
Sbjct: 28  SPNNLTEQTCSPLRAHSTFKEPVFLL 53


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 86  VKSAHFLTNRPKSAKSLINQKNRP 157
           VK   FLTN   +  SL+ Q NRP
Sbjct: 675 VKDYDFLTNLNATTLSLLTQSNRP 698


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -1

Query: 418 IAPAPFD-FFRSFLATFAGFPRQALNR 341
           +A APFD F   F+A  +GF  +  NR
Sbjct: 314 LASAPFDDFIELFVAVHSGFTERLANR 340


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 193 SPLLKNVDSNVKGRKTVYQGEAH 261
           SP+L+  D  + G +TVY G  H
Sbjct: 309 SPVLQKPDLIMTGNRTVYIGNIH 331


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,890,914
Number of Sequences: 5004
Number of extensions: 38879
Number of successful extensions: 73
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)