Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0943X.Seq
         (436 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    25   0.28 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   2.6  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   4.5  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 25.4 bits (53), Expect = 0.28
 Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
 Frame = -2

Query: 285 LIRVMVHVVGLAL--IDGFSPF 226
           L+ V VHVV L L  +D FSPF
Sbjct: 571 LVMVSVHVVALVLYLLDRFSPF 592


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 426 PAP*RPLLSISSVLFSPRSPAF 361
           P P  PL      LF P SPA+
Sbjct: 474 PLPSLPLPGADDDLFGPASPAY 495


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 218 ESTFFNSGLLFQTGTTLNPI 159
           E  +  SG L+   TT+NPI
Sbjct: 307 EWLYILSGCLYYFSTTINPI 326


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,189
Number of Sequences: 438
Number of extensions: 2978
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)