Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0941.Seq
         (659 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2XWK3 Cluster: Nicotinic acetylcholine receptor subuni...    33   8.0  

>UniRef50_Q2XWK3 Cluster: Nicotinic acetylcholine receptor subunit
           type K; n=1; Lymnaea stagnalis|Rep: Nicotinic
           acetylcholine receptor subunit type K - Lymnaea
           stagnalis (Great pond snail)
          Length = 501

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +1

Query: 70  AKV*VFGIYFCLNLISVTTRVLFEFSNVRGVKFRHYNMR 186
           AKV + G Y+CLN+I +T   L  F N+  V F  Y  R
Sbjct: 304 AKVPLLGTYYCLNMILIT---LSSFLNIIAVHFSFYGAR 339


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 538,468,395
Number of Sequences: 1657284
Number of extensions: 9486659
Number of successful extensions: 23041
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 21347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22867
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50000004659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)