Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0941.Seq
         (659 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81043-5|CAB02802.2|  278|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AF125443-1|AAD12801.1|  783|Caenorhabditis elegans Hypothetical ...    28   5.1  

>Z81043-5|CAB02802.2|  278|Caenorhabditis elegans Hypothetical
           protein C29F3.6 protein.
          Length = 278

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -2

Query: 277 ANIYMFFFIMFIVLHVFFIMLLYFKFGFM*RAYYNV*IL 161
           +++Y+F+F     L VF      F FGF+   +++V +L
Sbjct: 58  SSLYLFYFCFMDFLDVFLFQENVFIFGFLVAVFHDVSVL 96


>AF125443-1|AAD12801.1|  783|Caenorhabditis elegans Hypothetical
           protein H32C10.3 protein.
          Length = 783

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -2

Query: 283 KKANIYMFFFIMFIVLHVFFIMLLYFKFG 197
           K    ++FF +   + HVF+++LL +  G
Sbjct: 581 KNLRAFVFFCLTIFMFHVFYVLLLLYMIG 609


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,385,747
Number of Sequences: 27780
Number of extensions: 259366
Number of successful extensions: 628
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)