Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0941.Seq
         (659 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    24   1.5  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    24   1.5  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    23   2.0  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   2.6  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   6.0  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   7.9  

>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 532 NNFDFEALYYLKFYCDRYECSY 597
           NN+++    Y K YC+ Y+  Y
Sbjct: 87  NNYNYNNNNYKKLYCNNYKKLY 108


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 532 NNFDFEALYYLKFYCDRYECSY 597
           NN+++    Y K YC+ Y+  Y
Sbjct: 87  NNYNYNNNNYKKLYCNNYKKLY 108


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 532 NNFDFEALYYLKFYCDRYECSY 597
           NN+++    Y K YC+ Y   Y
Sbjct: 87  NNYNYNNNNYKKLYCNNYRKLY 108


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -2

Query: 271 IYMFFFIMFIVLHVFFIMLLYFKFG 197
           +Y    I+F ++ + FI +LY + G
Sbjct: 205 LYQLSCILFFLIPMVFIAVLYIRIG 229


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 152 TFENSNNTRVVTDIKFRQK 96
           TFE   N RV+ +++ RQ+
Sbjct: 247 TFEEIQNQRVMANVRERQR 265


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -1

Query: 86  NT*TLASSPNFNNTPGNPDLSQSQRSQI 3
           +T + ASS N + + G+P +S+S    +
Sbjct: 183 STSSTASSRNSDRSAGSPSVSESDEVDV 210


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,736
Number of Sequences: 438
Number of extensions: 3364
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)