Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0940.Seq
(729 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 33 0.032
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 29 0.68
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 27 2.7
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom... 26 4.8
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy... 26 4.8
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 26 6.3
SPBC1105.02c |lys4||homocitrate synthase |Schizosaccharomyces po... 25 8.4
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase... 25 8.4
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 25 8.4
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 33.5 bits (73), Expect = 0.032
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = +2
Query: 107 SAASLREDSDHRDAAEDPLDREGHHAWSPRQRRGPRGHRDAGRQRSKPDES 259
S A S+++ A + GH S R RG R G +R KPD S
Sbjct: 913 SGAGFGSGSNYKSAPSRGVSHHGHGGMSGSHRGSQRGSRRGGGERDKPDPS 963
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 29.1 bits (62), Expect = 0.68
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = -1
Query: 504 WTDVTSRLATPAPVYTLDRFQSIVVVCSVELLRANHNLCCSRCG--RS*IWYQGD 346
W++ L A +Y L Q + VC + N CCS+C S W+ G+
Sbjct: 1069 WSEYIRNLYPKAYIYLL---QYTIAVCKPTIAPTNVACCCSKCNSTMSPFWWPGN 1120
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1428
Score = 27.1 bits (57), Expect = 2.7
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = -3
Query: 169 TVERIFSCVPMVGILSQTCSRLVLILLSVHSRASFLASLVTSSEASAIA 23
T+E + + G + S V+ILL VHS+ F ASL+ A+A+A
Sbjct: 1295 TIELVHPNICTDGCILFQASGSVVILLEVHSQQKF-ASLIPIIVATALA 1342
>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 26.2 bits (55), Expect = 4.8
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +2
Query: 89 QEDQDQSAASLREDSDHRDAAEDPLDREGHHAW 187
+E D + L E+ D + D ++REG + W
Sbjct: 64 REGSDLVISCLPEERDDAEVTRDLIEREGRNCW 96
>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 26.2 bits (55), Expect = 4.8
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 10/89 (11%)
Frame = +2
Query: 110 AASLREDSDHRDAAEDPLDREGHHAWSPRQRRG-PRGHRDAGRQRSKPDE--------SV 262
A +L +D R ++ L EG++ WS + + G P D +KP++ ++
Sbjct: 626 AMTLAQDIASRRKSKADLIDEGYNRWSFQSKEGLPDWFLDEETTVNKPNKPITKEAVLAL 685
Query: 263 KETVKASEGASI-KIRTEQGGYRLRWVRR 346
+E +KA I K+ QG ++R ++R
Sbjct: 686 REKMKALNARPIKKVLEAQGRKKMRTIKR 714
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -1
Query: 450 RFQSIVVVCSVELLRANHNLCCSRCGRS*IWYQGDRRTQR 331
+ + +V ELLRA H +CC+ G GDRR +
Sbjct: 522 KLRILVAAAEKELLRAAHVICCTCVG------AGDRRISK 555
>SPBC1105.02c |lys4||homocitrate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 418
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 114 QVCERIPTIGTQLKILSTVKATMLGAQ-GSEEDQEATEMLVGNAQNL 251
Q CE I +G + KIL+ ++ M A+ E + ++++G +Q L
Sbjct: 86 QDCEAICKLGLKCKILTHIRCHMDDARVAVETGVDGVDVVIGTSQYL 132
>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 444
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +1
Query: 274 KSIGRRIHQNPHGAGRLPTALGPPVALVPDLTSTT 378
+ I R+H+ A +P P V VP++ S T
Sbjct: 296 QEISERLHREYFSASPIPVKTPPYVTAVPEIESIT 330
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 25.4 bits (53), Expect = 8.4
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 200 RRGPRGHRDAGRQRSKPDESVKETVKASEGAS 295
RR RD RQ+ +ES K TVK + G +
Sbjct: 27 RRWTDRARDRKRQKRNSNESSKSTVKRNSGTN 58
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,407,648
Number of Sequences: 5004
Number of extensions: 43442
Number of successful extensions: 138
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -