Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0940.Seq
(729 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40802-1|AAM81106.1| 999|Caenorhabditis elegans Dense body prot... 112 3e-25
U40802-3|AAM81105.1| 369|Caenorhabditis elegans Dense body prot... 103 1e-22
U40802-2|AAM81104.1| 1010|Caenorhabditis elegans Dense body prot... 103 1e-22
J04804-1|AAA28002.1| 1010|Caenorhabditis elegans protein ( C.ele... 103 1e-22
AF038619-6|AAB92077.2| 442|Caenorhabditis elegans Hypothetical ... 32 0.37
U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z70270-9|CAI79144.1| 261|Caenorhabditis elegans Hypothetical pr... 28 5.9
U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical p... 28 5.9
AC024813-3|AAK27881.1| 461|Caenorhabditis elegans Est (ever sho... 28 5.9
AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever sho... 28 5.9
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter... 28 7.9
AF125459-6|AAN60503.1| 219|Caenorhabditis elegans Hypothetical ... 28 7.9
AF125459-5|AAD12844.1| 345|Caenorhabditis elegans Hypothetical ... 28 7.9
AF039719-12|AAB96758.1| 293|Caenorhabditis elegans Hypothetical... 28 7.9
>U40802-1|AAM81106.1| 999|Caenorhabditis elegans Dense body protein
1, isoform c protein.
Length = 999
Score = 112 bits (269), Expect = 3e-25
Identities = 58/83 (69%), Positives = 68/83 (81%)
Frame = +3
Query: 6 VIATAKAIAEASEEVTRLAKKLALECTDKRIRTNLLQVCERIPTIGTQLKILSTVKATML 185
+I +KAIA++SEEVTRLA +LA CTD ++RT LLQV ERIPTI TQLK+LSTVKATML
Sbjct: 881 LINCSKAIADSSEEVTRLAVQLARLCTDIKMRTALLQVSERIPTIATQLKVLSTVKATML 940
Query: 186 GAQGSEEDQEATEMLVGNAQNLM 254
G+ SEED EA + LV NAQNLM
Sbjct: 941 GSASSEEDDEAMQQLVHNAQNLM 963
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/34 (58%), Positives = 26/34 (76%)
Frame = +2
Query: 254 ESVKETVKASEGASIKIRTEQGGYRLRWVRRSPW 355
+SVK+ V+A+E ASIKIRT G RLRW+R+ W
Sbjct: 964 QSVKDVVRAAEAASIKIRT-NSGLRLRWLRKPMW 996
>U40802-3|AAM81105.1| 369|Caenorhabditis elegans Dense body protein
1, isoform b protein.
Length = 369
Score = 103 bits (247), Expect = 1e-22
Identities = 59/94 (62%), Positives = 70/94 (74%), Gaps = 11/94 (11%)
Frame = +3
Query: 6 VIATAKAIAEASEEVTRLAKKLALECTDKRIRTNLLQVCERIPTIGTQLKILSTVKATML 185
+I +KAIA++SEEVTRLA +LA CTD ++RT LLQV ERIPTI TQLK+LSTVKATML
Sbjct: 240 LINCSKAIADSSEEVTRLAVQLARLCTDIKMRTALLQVSERIPTIATQLKVLSTVKATML 299
Query: 186 GA-----------QGSEEDQEATEMLVGNAQNLM 254
G+ +GSEED EA + LV NAQNLM
Sbjct: 300 GSANVIGPYGQPVEGSEEDDEAMQQLVHNAQNLM 333
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/34 (58%), Positives = 26/34 (76%)
Frame = +2
Query: 254 ESVKETVKASEGASIKIRTEQGGYRLRWVRRSPW 355
+SVK+ V+A+E ASIKIRT G RLRW+R+ W
Sbjct: 334 QSVKDVVRAAEAASIKIRT-NSGLRLRWLRKPMW 366
>U40802-2|AAM81104.1| 1010|Caenorhabditis elegans Dense body protein
1, isoform a protein.
Length = 1010
Score = 103 bits (247), Expect = 1e-22
Identities = 59/94 (62%), Positives = 70/94 (74%), Gaps = 11/94 (11%)
Frame = +3
Query: 6 VIATAKAIAEASEEVTRLAKKLALECTDKRIRTNLLQVCERIPTIGTQLKILSTVKATML 185
+I +KAIA++SEEVTRLA +LA CTD ++RT LLQV ERIPTI TQLK+LSTVKATML
Sbjct: 881 LINCSKAIADSSEEVTRLAVQLARLCTDIKMRTALLQVSERIPTIATQLKVLSTVKATML 940
Query: 186 GA-----------QGSEEDQEATEMLVGNAQNLM 254
G+ +GSEED EA + LV NAQNLM
Sbjct: 941 GSANVIGPYGQPVEGSEEDDEAMQQLVHNAQNLM 974
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/34 (58%), Positives = 26/34 (76%)
Frame = +2
Query: 254 ESVKETVKASEGASIKIRTEQGGYRLRWVRRSPW 355
+SVK+ V+A+E ASIKIRT G RLRW+R+ W
Sbjct: 975 QSVKDVVRAAEAASIKIRT-NSGLRLRWLRKPMW 1007
>J04804-1|AAA28002.1| 1010|Caenorhabditis elegans protein ( C.elegans
vinculin (deb-1) gene, complete cds. ).
Length = 1010
Score = 103 bits (247), Expect = 1e-22
Identities = 59/94 (62%), Positives = 70/94 (74%), Gaps = 11/94 (11%)
Frame = +3
Query: 6 VIATAKAIAEASEEVTRLAKKLALECTDKRIRTNLLQVCERIPTIGTQLKILSTVKATML 185
+I +KAIA++SEEVTRLA +LA CTD ++RT LLQV ERIPTI TQLK+LSTVKATML
Sbjct: 881 LINCSKAIADSSEEVTRLAVQLARLCTDIKMRTALLQVSERIPTIATQLKVLSTVKATML 940
Query: 186 GA-----------QGSEEDQEATEMLVGNAQNLM 254
G+ +GSEED EA + LV NAQNLM
Sbjct: 941 GSANVIGPYGQPVEGSEEDDEAMQQLVHNAQNLM 974
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/34 (58%), Positives = 26/34 (76%)
Frame = +2
Query: 254 ESVKETVKASEGASIKIRTEQGGYRLRWVRRSPW 355
+SVK+ V+A+E ASIKIRT G RLRW+R+ W
Sbjct: 975 QSVKDVVRAAEAASIKIRT-NSGLRLRWLRKPMW 1007
>AF038619-6|AAB92077.2| 442|Caenorhabditis elegans Hypothetical
protein F56A11.6 protein.
Length = 442
Score = 32.3 bits (70), Expect = 0.37
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +2
Query: 53 QTRQEAGPRVHRQEDQDQSAASL-REDSDHRDAAEDPLDREGHHAWSPRQRRGPRGHRDA 229
++ Q++ R + D+D+S + RED D + +D DR+ + R+ R + D
Sbjct: 291 KSHQKSVDRDKTRSDKDRSRSRKDREDRDRERSRKDREDRDRERSRKEREDRSRKDREDR 350
Query: 230 GRQRSKPD 253
R+RS+ +
Sbjct: 351 ERERSRKE 358
Score = 28.7 bits (61), Expect = 4.5
Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 1/98 (1%)
Frame = +2
Query: 62 QEAGPRVHRQEDQDQSAASLREDSDHRDAAEDPLDREGHHAWSPRQR-RGPRGHRDAGRQ 238
+E R R++ + + + RED +D DRE R R R R + R
Sbjct: 339 REDRSRKDREDRERERSRKEREDRSRKDRERSRQDREDRDRDRDRDRSRKDRDDKSCSR- 397
Query: 239 RSKPDESVKETVKASEGASIKIRTEQGGYRLRWVRRSP 352
RS+ D S + + S + R+ Q + R V P
Sbjct: 398 RSRDDRSEERKDRKSRDDRERPRSRQDKSKTRSVEDRP 435
>U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical protein
C18H2.1 protein.
Length = 1770
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +2
Query: 119 LREDSDHRDAAEDPLDREGHHAW-SPRQRRGPRGHRDAGRQRSKPDESVKETVKASEGAS 295
LRE S HR+A HHA + R RR P+ + R+R +S K + ++ S
Sbjct: 1509 LREPSTHRNAPLQTTQVTAHHAGNASRPRRQPKSTQCVPRKR----KSAKSIISRAQEES 1564
Query: 296 IKIRTEQGG 322
+ + ++ G
Sbjct: 1565 KRSKRQESG 1573
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 28.3 bits (60), Expect = 5.9
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Frame = +2
Query: 83 HRQEDQDQSAASLREDSD--HRDAAEDPL----DREGHHAWSPRQRRGPRGHRDAGRQRS 244
HR +S + RE+S R A++ P+ +RE + SPR R G G G R
Sbjct: 3 HRSRSNSRSQSRSRENSRGRSRSASKSPVYHRRERESSRSRSPRARYGGGGGGGGGGGRG 62
Query: 245 KPDESVKETVKASE 286
+ + +E + S+
Sbjct: 63 RNQQYDRENPQPSK 76
>Z70270-9|CAI79144.1| 261|Caenorhabditis elegans Hypothetical
protein C53D6.11 protein.
Length = 261
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Frame = -3
Query: 130 ILSQTCSRLVLILLSVHSRASFLASLVTSSEASAIA----FAVAIT 5
I+ C ++L L V S S +TS EASA+ F++AIT
Sbjct: 116 IVGAVCYAIILTALLVIDATSLTVSCITSPEASAVTSAYDFSLAIT 161
>U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical
protein B0336.3 protein.
Length = 719
Score = 28.3 bits (60), Expect = 5.9
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 1/97 (1%)
Frame = +2
Query: 59 RQEAGPRVHRQEDQDQSAASLREDSDHRDAAEDPLDREGHHAWSPRQRRGPRGHRDAGRQ 238
+ + P + E + S++R+ + D+E + SPR RRG +GR
Sbjct: 116 KSSSSPSASKAESRPLRKRISPPPSENREKEKQSRDKERRRSRSPRDRRGRATTSRSGRT 175
Query: 239 RSKP-DESVKETVKASEGASIKIRTEQGGYRLRWVRR 346
S D K ++ +S RT Y+ R RR
Sbjct: 176 SSSDRDRHSKRRSRSRSRSSSGSRTPP--YKSRSSRR 210
>AC024813-3|AAK27881.1| 461|Caenorhabditis elegans Est (ever
shorter telomeres) homologprotein 1, isoform b protein.
Length = 461
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = +2
Query: 167 REGHHAWSPRQRRGPRGHRDAGRQRSKPDESVKETVKASEGASIKIRTEQ 316
+E A SPR+ R G R PDES +E +S G SI E+
Sbjct: 294 QEAQKAASPRRNNRRNNRRGGGNSRYHPDESDRE---SSFGGSIAEEKEE 340
>AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever
shorter telomeres) homologprotein 1, isoform a protein.
Length = 1241
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = +2
Query: 167 REGHHAWSPRQRRGPRGHRDAGRQRSKPDESVKETVKASEGASIKIRTEQ 316
+E A SPR+ R G R PDES +E +S G SI E+
Sbjct: 294 QEAQKAASPRRNNRRNNRRGGGNSRYHPDESDRE---SSFGGSIAEEKEE 340
>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 6 protein.
Length = 1254
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -1
Query: 315 CSVRILMDAPSDAFTVSFTLSS 250
CS + + DAPS+ F VS T+SS
Sbjct: 49 CSCKCVPDAPSNPFDVSTTISS 70
>AF125459-6|AAN60503.1| 219|Caenorhabditis elegans Hypothetical
protein Y25C1A.8b protein.
Length = 219
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +2
Query: 122 REDSDHRDAAEDPLDREGHHAWSPRQRRGPRGHRDAGRQRSK 247
R+ HR + P DR+ R R R +RD R R +
Sbjct: 137 RDRESHRKRSNSPRDRDRKRGKRSRSRSRERSYRDDRRDRKR 178
>AF125459-5|AAD12844.1| 345|Caenorhabditis elegans Hypothetical
protein Y25C1A.8a protein.
Length = 345
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +2
Query: 122 REDSDHRDAAEDPLDREGHHAWSPRQRRGPRGHRDAGRQRSK 247
R+ HR + P DR+ R R R +RD R R +
Sbjct: 263 RDRESHRKRSNSPRDRDRKRGKRSRSRSRERSYRDDRRDRKR 304
>AF039719-12|AAB96758.1| 293|Caenorhabditis elegans Hypothetical
protein K04F10.7 protein.
Length = 293
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
Frame = +2
Query: 122 REDSDHRDAAEDPLDREGHHAWSPRQRRGPRGHRDAGRQR--SKPDESVKETVKASEGAS 295
R+ HR + D + HH + HR A ++R +P+ + +S GA
Sbjct: 135 RDHRQHRPTSHHHRDHKDHHRRDDKHHHRDSNHRHAHKRRHQEEPNNNSNNGTSSSGGAP 194
Query: 296 IKIRTEQGG 322
+ + G
Sbjct: 195 PLVPNNENG 203
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,959,032
Number of Sequences: 27780
Number of extensions: 273980
Number of successful extensions: 843
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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