Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0939.Seq
         (779 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1727 + 39477107-39477395,39477493-39477722                       29   4.1  
01_03_0300 + 14782156-14782225,14782708-14782780,14782800-147830...    29   4.1  
06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687     28   9.6  

>01_06_1727 + 39477107-39477395,39477493-39477722
          Length = 172

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 557 ARSTDAGGATGRVRTALCASVNKYPDLDWKI 649
           +RS   GGA G V   +CA V ++  ++W++
Sbjct: 13  SRSKSIGGAGGGVGADICAMVAEHEKIEWEV 43


>01_03_0300 +
           14782156-14782225,14782708-14782780,14782800-14783076,
           14783715-14783885,14783992-14784012
          Length = 203

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = +2

Query: 530 YIKGAPYTIARSTDAGGATGR--VRTALCASVNKYPDLDWKIFFQEKKFCDFRVVTTDRL 703
           ++ G P T AR +  G    +  V  +  A V ++  L W+  +  + +CDF    T  L
Sbjct: 62  HLLGPPTTCARRSTTGERRMQAVVAGSTSAGVRRHEVLQWRRAWDNRSWCDFAPFATTNL 121

Query: 704 SV 709
           ++
Sbjct: 122 NM 123


>06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687
          Length = 353

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = -3

Query: 735 QTLIDMQQLTERRSVVTTLKSQNFFS*KNIFQSKSGYLL--TDAHRAVRTRPV 583
           +  + M+++ E R ++ T+KS+ F   +   +S +GY++    + R  R RPV
Sbjct: 218 EAYVRMEKVEEGRVLLETMKSKGFTPSEEAVRSGTGYVVLPCPSRRGGRKRPV 270


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,521,089
Number of Sequences: 37544
Number of extensions: 362904
Number of successful extensions: 738
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)