Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0939.Seq
         (779 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY326463-1|AAR99513.1|   74|Homo sapiens putative protein STRF7 ...    33   1.5  
BC089439-1|AAH89439.1|  439|Homo sapiens gap junction protein, a...    30   8.1  
AY285161-1|AAP37488.1|  436|Homo sapiens connexin47 protein.           30   8.1  
AL359510-10|CAI15069.1|  439|Homo sapiens gap junction protein, ...    30   8.1  
AF014643-1|AAB94511.1|  436|Homo sapiens connexin46.6 protein.         30   8.1  

>AY326463-1|AAR99513.1|   74|Homo sapiens putative protein STRF7
           protein.
          Length = 74

 Score = 32.7 bits (71), Expect = 1.5
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +1

Query: 160 ICPVLSVSNVVDIEMIVVKVIKLLMNRTREAPDGCTVCC 276
           + PVL +++V     +++  +K+L  ++ E PDG   CC
Sbjct: 35  LIPVLGITSVSSFSSLLLCALKVLEGKSSEGPDGSFRCC 73


>BC089439-1|AAH89439.1|  439|Homo sapiens gap junction protein,
           alpha 12, 47kDa protein.
          Length = 439

 Score = 30.3 bits (65), Expect = 8.1
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = -2

Query: 604 GGPHTTRGPARVGAPCDRIWSTLNVIVTSSL*VTSRHKRPTIFPR 470
           G P  +RGP R GAP  R  S  +            H+RP   PR
Sbjct: 376 GLPAASRGPPRAGAPASRTGSATSAGTVGEQGRPGTHERPGAKPR 420


>AY285161-1|AAP37488.1|  436|Homo sapiens connexin47 protein.
          Length = 436

 Score = 30.3 bits (65), Expect = 8.1
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = -2

Query: 604 GGPHTTRGPARVGAPCDRIWSTLNVIVTSSL*VTSRHKRPTIFPR 470
           G P  +RGP R GAP  R  S  +            H+RP   PR
Sbjct: 373 GLPAASRGPPRAGAPASRTGSATSAGTVGEQGRPGTHERPGAKPR 417


>AL359510-10|CAI15069.1|  439|Homo sapiens gap junction protein,
           alpha 12, 47kDa protein.
          Length = 439

 Score = 30.3 bits (65), Expect = 8.1
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = -2

Query: 604 GGPHTTRGPARVGAPCDRIWSTLNVIVTSSL*VTSRHKRPTIFPR 470
           G P  +RGP R GAP  R  S  +            H+RP   PR
Sbjct: 376 GLPAASRGPPRAGAPASRTGSATSAGTVGEQGRPGTHERPGAKPR 420


>AF014643-1|AAB94511.1|  436|Homo sapiens connexin46.6 protein.
          Length = 436

 Score = 30.3 bits (65), Expect = 8.1
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = -2

Query: 604 GGPHTTRGPARVGAPCDRIWSTLNVIVTSSL*VTSRHKRPTIFPR 470
           G P  +RGP R GAP  R  S  +            H+RP   PR
Sbjct: 373 GLPAASRGPPRAGAPASRTGSATSAGTVGEQGRPGTHERPGAKPR 417


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,801,059
Number of Sequences: 237096
Number of extensions: 1950730
Number of successful extensions: 7029
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7029
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9478778060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)