Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0939.Seq
         (779 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-2322|AAN09382.3| 16223|Drosophila melanogaster CG32580-...    29   5.4  
BT022088-1|AAY33504.1|  787|Drosophila melanogaster RE03647p pro...    29   9.5  
BT010028-1|AAQ22497.1|  787|Drosophila melanogaster RE03551p pro...    29   9.5  
AF279586-1|AAF82381.1| 1384|Drosophila melanogaster TIM2 protein...    29   9.5  
AF268472-1|AAF73481.1| 1384|Drosophila melanogaster TIMEOUT prot...    29   9.5  
AE014297-1632|AAF54908.3| 1384|Drosophila melanogaster CG7855-PA...    29   9.5  
AE013599-467|AAF59222.3| 2262|Drosophila melanogaster CG30494-PA...    29   9.5  

>AE014298-2322|AAN09382.3| 16223|Drosophila melanogaster CG32580-PA
            protein.
          Length = 16223

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = -3

Query: 738  KQTLIDMQQLTERRSVVTTLKSQNFFS*KNIFQSKSGYLLTDAHRAVRTRPVAPPASVLR 559
            +++ ++  Q+TE    ++T  SQ+    KNIF S S Y    +    RT  ++ P S+  
Sbjct: 9201 QESSVEENQMTEVPWTLSTSLSQSSSEPKNIFSSPSLYEDNISQEDTRTLSISVPQSIAT 9260

Query: 558  A 556
            A
Sbjct: 9261 A 9261



 Score = 28.7 bits (61), Expect = 9.5
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = -3

Query: 714  QLTERRSVVTTLKSQNFFS*KNIFQSKSGYLLTDAHRAVRTRPVAPPASVLRA 556
            Q+TE    ++T  SQ+    KNIF S S      +    RT P++ P S+  A
Sbjct: 5910 QMTEVPWTLSTSLSQSSSQAKNIFSSPSSNEDNISQEDTRTLPISVPQSIATA 5962



 Score = 28.7 bits (61), Expect = 9.5
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = -3

Query: 714  QLTERRSVVTTLKSQNFFS*KNIFQSKSGYLLTDAHRAVRTRPVAPPASVLRA 556
            Q+TE    ++T  SQ+    KNIF S S      +    RT P++ P S+  A
Sbjct: 7851 QMTEVPWTLSTSLSQSSSQAKNIFSSPSSNEDNISQEDTRTLPISVPQSIATA 7903



 Score = 28.7 bits (61), Expect = 9.5
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = -3

Query: 714  QLTERRSVVTTLKSQNFFS*KNIFQSKSGYLLTDAHRAVRTRPVAPPASVLRA 556
            Q+TE    ++T  SQ+    KNIF S S      +    RT P++ P S+  A
Sbjct: 8142 QMTEVPWTLSTSLSQSSSQAKNIFSSPSSNEDNISQEDTRTLPISVPQSIATA 8194



 Score = 28.7 bits (61), Expect = 9.5
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = -3

Query: 714  QLTERRSVVTTLKSQNFFS*KNIFQSKSGYLLTDAHRAVRTRPVAPPASVLRA 556
            Q+TE    ++T  SQ+    KNIF S S      +    RT P++ P S+  A
Sbjct: 8821 QMTEVPWTLSTSLSQSSSQAKNIFSSPSSNEDNISQEDTRTLPISVPQSIATA 8873


>BT022088-1|AAY33504.1|  787|Drosophila melanogaster RE03647p
           protein.
          Length = 787

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 483 RFFLEKNVLRGTEFEMKRRSFKNKCFN*ITMTKQH 379
           RFF+E N L G + ++   S   +CF+ +    QH
Sbjct: 380 RFFMEFNRLSGLQLQLVSESLSVQCFHWVLTRMQH 414


>BT010028-1|AAQ22497.1|  787|Drosophila melanogaster RE03551p
           protein.
          Length = 787

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 483 RFFLEKNVLRGTEFEMKRRSFKNKCFN*ITMTKQH 379
           RFF+E N L G + ++   S   +CF+ +    QH
Sbjct: 380 RFFMEFNRLSGLQLQLVSESLSVQCFHWVLTRMQH 414


>AF279586-1|AAF82381.1| 1384|Drosophila melanogaster TIM2 protein
           protein.
          Length = 1384

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 483 RFFLEKNVLRGTEFEMKRRSFKNKCFN*ITMTKQH 379
           RFF+E N L G + ++   S   +CF+ +    QH
Sbjct: 380 RFFMEFNRLSGLQLQLVSESLSVQCFHWVLTRMQH 414


>AF268472-1|AAF73481.1| 1384|Drosophila melanogaster TIMEOUT
           protein.
          Length = 1384

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 483 RFFLEKNVLRGTEFEMKRRSFKNKCFN*ITMTKQH 379
           RFF+E N L G + ++   S   +CF+ +    QH
Sbjct: 380 RFFMEFNRLSGLQLQLVSESLSVQCFHWVLTRMQH 414


>AE014297-1632|AAF54908.3| 1384|Drosophila melanogaster CG7855-PA
           protein.
          Length = 1384

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 483 RFFLEKNVLRGTEFEMKRRSFKNKCFN*ITMTKQH 379
           RFF+E N L G + ++   S   +CF+ +    QH
Sbjct: 380 RFFMEFNRLSGLQLQLVSESLSVQCFHWVLTRMQH 414


>AE013599-467|AAF59222.3| 2262|Drosophila melanogaster CG30494-PA
           protein.
          Length = 2262

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 645 FQSKSGYLLTDAHRAVRTRPVAPPASVLRAIVYGA 541
           F S  G L     RA+   P+APPA V+  +  G+
Sbjct: 719 FHSSGGDLPETDSRAIEPLPLAPPAEVIEVVPLGS 753


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,749,006
Number of Sequences: 53049
Number of extensions: 643540
Number of successful extensions: 1264
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1264
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3623012976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)