Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0939.Seq
         (779 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80848-1|AAB37990.3|  389|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AF039042-11|AAC48251.1|  343|Caenorhabditis elegans Serpentine r...    28   6.5  
AF099915-1|AAC68771.1|  460|Caenorhabditis elegans Hypothetical ...    28   8.6  

>U80848-1|AAB37990.3|  389|Caenorhabditis elegans Hypothetical
           protein T10H10.3 protein.
          Length = 389

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = -3

Query: 744 MLKQTLIDMQQLTERRSVVTTLKSQNFFS*KNIFQSKSGYLLTDAHRAVRTRPVAPPASV 565
           +L+  L + +QLTE   ++  L  Q  F     ++ K   L  + HR   +RP  PPA +
Sbjct: 329 LLEWDLFNFEQLTEYEHLMMKLYKQEVFDIVKKYEKKRNVLNREIHRRDVSRP--PPARI 386


>AF039042-11|AAC48251.1|  343|Caenorhabditis elegans Serpentine
           receptor, class h protein199 protein.
          Length = 343

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 346 EYF*LKLRLRIMLFSHSYLIKTFVFETSPF 435
           +++ L L + +M+F +SY I T  F  SPF
Sbjct: 52  KWYMLILHIYVMIFDYSYTIMTVPFVLSPF 81


>AF099915-1|AAC68771.1|  460|Caenorhabditis elegans Hypothetical
           protein E02H9.6 protein.
          Length = 460

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -2

Query: 370 SVTLTRSIQ-IYLYSINNIEHFLRKTTIRYATYSTLYIR 257
           S+TLT+ I  I+++  + I  F R  TIRY   + +YI+
Sbjct: 313 SLTLTKLIDVIFIFPRSIISIFFRHHTIRYLLQNPIYIQ 351


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,790,542
Number of Sequences: 27780
Number of extensions: 351221
Number of successful extensions: 831
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)