Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0936.Seq
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo...    26   4.7  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   6.2  

>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 500

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2

Query: 329 LENSHNTTPTNDRKKWNPKNNNIFLSIIRNM*T*PTELLAG 451
           +EN++NT  +    KW  K   + L  I  M     ELLAG
Sbjct: 66  VENAYNTFRSGIWAKWPGKQRGLVLRKIAKMMREKRELLAG 106


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 71   PFAKKDAPLVTSAGYQSSAMQGGGAYASGRGMYEYESGS 187
            P     AP VTS G ++S++ G G  ++    +  E+ S
Sbjct: 896  PVTSSVAPAVTSTGSETSSVVGSGTDSATSSSWTAETSS 934


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,975,515
Number of Sequences: 5004
Number of extensions: 35562
Number of successful extensions: 107
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)