Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0936.Seq
(592 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0183 - 23384290-23384783,23385064-23385139,23385291-23385296 31 0.91
06_01_0099 + 824557-825532,826090-826245,826422-828064 30 1.2
05_01_0434 - 3438978-3439237,3439638-3439908,3440078-3440232,344... 30 1.6
02_02_0068 + 6536756-6537253 29 2.1
08_02_0715 - 20352613-20352852,20352926-20352982,20354208-203543... 29 3.7
01_01_0215 - 1838452-1838685,1839125-1839240,1840200-1840734 29 3.7
09_06_0374 + 22649455-22650024,22650085-22650637,22650812-226511... 28 4.8
06_03_0743 + 24069752-24070483,24071890-24072345 28 6.4
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 27 8.5
01_01_0763 + 5898719-5899021,5899124-5899518,5899619-5899703,589... 27 8.5
>04_04_0183 - 23384290-23384783,23385064-23385139,23385291-23385296
Length = 191
Score = 30.7 bits (66), Expect = 0.91
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +2
Query: 53 YPPGHTPFAKKDAPLVTSAGYQSSAMQGGGAYASGRGMY 169
YP + P A AP + GY +GGG SG G Y
Sbjct: 87 YPYRYYPGAPPPAPYYGNGGYPPPHQRGGGGGGSGGGYY 125
>06_01_0099 + 824557-825532,826090-826245,826422-828064
Length = 924
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = -2
Query: 291 PRKYGD-LHDNTRLAQHSGRQIGTAVFFSECFSFMREPDSYSYMPRPEAYAPPP 133
P + D + D A H + + CF F+ P+S+S R A AP P
Sbjct: 367 PEAFQDQMDDEVSYAAHKSQPVSVPTCQYLCFDFLTHPNSFSPHHRAPAMAPYP 420
>05_01_0434 -
3438978-3439237,3439638-3439908,3440078-3440232,
3440367-3440552,3444429-3444518,3446514-3447012
Length = 486
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Frame = +2
Query: 5 STLIAGTKNVAGPAVYYPP--GHTPFAKKDAPLVTSAGYQSSAMQGGGAYASGRGMYEYE 178
+ ++A + + PA P G + A V SA ++A GGG G+G ++
Sbjct: 40 AVVLATLRYMPAPATAPPTVDGGGATVRSSAATVDSAAAAAAAAPGGGGVERGKGKRKHV 99
Query: 179 SGSRMKEKHSEKKTAVPI 232
+E +EKK A +
Sbjct: 100 WSGEEEEVAAEKKAAAGV 117
>02_02_0068 + 6536756-6537253
Length = 165
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -3
Query: 110 RLTSLRARPSWRRACVPGGSTRRARPRSWCRRL 12
RL + R WRR GG+ +R R W RRL
Sbjct: 108 RLEARRCCRRWRRGEEEGGAAKRRTARRWGRRL 140
>08_02_0715 -
20352613-20352852,20352926-20352982,20354208-20354339,
20354754-20354828,20355779-20355943,20356031-20356263,
20356484-20356574,20356789-20357223,20357911-20357976,
20358688-20358807,20358915-20359121
Length = 606
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = +2
Query: 74 FAKKDAPLVTSAGYQSSAMQGGGAYASGRGMYEYESG-SRMKEKHSEKKTAV 226
FA + +AGY SSA AYA G G G R + H+ AV
Sbjct: 5 FAARRLRPPATAGYPSSAAAAAAAYAHGGGASVLPDGLDRASDAHARNAAAV 56
>01_01_0215 - 1838452-1838685,1839125-1839240,1840200-1840734
Length = 294
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = -3
Query: 56 GSTRRARPRSWCRRLG 9
G TRR RPRSW RLG
Sbjct: 41 GLTRRRRPRSWGTRLG 56
>09_06_0374 + 22649455-22650024,22650085-22650637,22650812-22651147,
22651171-22652605,22652939-22653062
Length = 1005
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -2
Query: 171 SYMPRPEAYAPPPCIALDWYPADVTKGASFLAKGVCPG 58
SY R ++P +ALD +P A L KG+CPG
Sbjct: 938 SYQARDPNFSP--WMALDEFPPGTEDRARALNKGLCPG 973
>06_03_0743 + 24069752-24070483,24071890-24072345
Length = 395
Score = 27.9 bits (59), Expect = 6.4
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = +2
Query: 104 SAGYQSSAMQGGGAYASGRG---MYEYESGSRMKEKHSEKKTAVPICLPLCCASL 259
+AG Q++A A A+G G M E G +++ A LPL CAS+
Sbjct: 149 AAGNQAAAAAAAEASAAGGGSSRMQVEEEGGEEEDEDEAAAAAATATLPLGCASI 203
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/57 (31%), Positives = 23/57 (40%)
Frame = -2
Query: 183 PDSYSYMPRPEAYAPPPCIALDWYPADVTKGASFLAKGVCPGG*YTAGPATFLVPAI 13
P SY+P P YAP P + YP +T A PG G +L P +
Sbjct: 701 PQPPSYVPSPPEYAPEPPVYAP-YPPGITPSPPEYAPEPPPGP--PGGGGGYLPPVV 754
>01_01_0763 +
5898719-5899021,5899124-5899518,5899619-5899703,
5899810-5900032,5900131-5900327,5900531-5900601,
5904034-5904218,5905914-5906068,5906241-5907632,
5907973-5908269
Length = 1100
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +2
Query: 98 VTSAGYQSSAMQGGGAYASGRGMYEYESGSRMKEKHSEKKTA 223
V AG SSA A A GR +EY +R+++ EK +A
Sbjct: 30 VRGAGNVSSAAVREMAVAEGRRQHEYSIDARLRQLAPEKVSA 71
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,556,978
Number of Sequences: 37544
Number of extensions: 260695
Number of successful extensions: 1084
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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