Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0936.Seq
(592 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF098993-9|AAC67463.3| 469|Caenorhabditis elegans Hypothetical ... 32 0.35
L10986-3|AAA28018.1| 650|Caenorhabditis elegans Abnormal cell m... 30 1.1
L10986-2|AAK84523.2| 667|Caenorhabditis elegans Abnormal cell m... 30 1.1
L10986-1|AAR25648.1| 779|Caenorhabditis elegans Abnormal cell m... 30 1.1
U70857-11|AAN84874.1| 295|Caenorhabditis elegans Hypothetical p... 29 1.9
U70857-10|AAB09175.1| 385|Caenorhabditis elegans Hypothetical p... 29 1.9
U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical pr... 29 1.9
U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z77662-15|CAI79240.1| 255|Caenorhabditis elegans Hypothetical p... 28 4.3
AC024765-6|AAF60526.2| 254|Caenorhabditis elegans Smn (survival... 28 4.3
Z81568-3|CAB04592.1| 643|Caenorhabditis elegans Hypothetical pr... 28 5.7
>AF098993-9|AAC67463.3| 469|Caenorhabditis elegans Hypothetical
protein T10B11.8 protein.
Length = 469
Score = 31.9 bits (69), Expect = 0.35
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = +2
Query: 101 TSAGYQSSAMQGGGAYASGRGMYEYESGSRMKEKHSEKKTAVP 229
TS+GYQS++ + +SG+ ++EYE +K+S + + P
Sbjct: 288 TSSGYQSNSHSSDSSSSSGQTVFEYEIKRNNDKKNSHDRPSDP 330
>L10986-3|AAA28018.1| 650|Caenorhabditis elegans Abnormal cell
migration protein10, isoform b protein.
Length = 650
Score = 30.3 bits (65), Expect = 1.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 195 FMREPDSYSYMPRPEAYAPPP 133
FMR PD Y+++ RPE Y P
Sbjct: 273 FMRRPDKYAFISRPELYLLTP 293
>L10986-2|AAK84523.2| 667|Caenorhabditis elegans Abnormal cell
migration protein10, isoform a protein.
Length = 667
Score = 30.3 bits (65), Expect = 1.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 195 FMREPDSYSYMPRPEAYAPPP 133
FMR PD Y+++ RPE Y P
Sbjct: 290 FMRRPDKYAFISRPELYLLTP 310
>L10986-1|AAR25648.1| 779|Caenorhabditis elegans Abnormal cell
migration protein10, isoform c protein.
Length = 779
Score = 30.3 bits (65), Expect = 1.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 195 FMREPDSYSYMPRPEAYAPPP 133
FMR PD Y+++ RPE Y P
Sbjct: 402 FMRRPDKYAFISRPELYLLTP 422
>U70857-11|AAN84874.1| 295|Caenorhabditis elegans Hypothetical
protein C10G8.8b protein.
Length = 295
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 98 VTSAGYQSSAMQGGGAYASGRGMYEYESG-SRMKEKHSEKKTAV 226
VT G Q+ +G G+G SG KE HSEKKT+V
Sbjct: 62 VTFPGKQNEDKEGKRGGKDGKGGNHGNSGRGNQKEGHSEKKTSV 105
>U70857-10|AAB09175.1| 385|Caenorhabditis elegans Hypothetical
protein C10G8.8a protein.
Length = 385
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 98 VTSAGYQSSAMQGGGAYASGRGMYEYESG-SRMKEKHSEKKTAV 226
VT G Q+ +G G+G SG KE HSEKKT+V
Sbjct: 152 VTFPGKQNEDKEGKRGGKDGKGGNHGNSGRGNQKEGHSEKKTSV 195
>U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical
protein C30G12.6a protein.
Length = 1100
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -2
Query: 309 LHFNALPRKYGDLHDNTRLAQHSGRQI 229
LH + KYGDLHD+ L +H+ ++I
Sbjct: 587 LHLMNVATKYGDLHDDKMLYKHALKKI 613
>U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical
protein C30G12.6b protein.
Length = 1097
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -2
Query: 309 LHFNALPRKYGDLHDNTRLAQHSGRQI 229
LH + KYGDLHD+ L +H+ ++I
Sbjct: 587 LHLMNVATKYGDLHDDKMLYKHALKKI 613
>Z77662-15|CAI79240.1| 255|Caenorhabditis elegans Hypothetical
protein F47B8.14 protein.
Length = 255
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 59 PGHTPFAKKDAPLVTSAGYQSSAMQGGGAY 148
P P A AP + GY ++A GGG+Y
Sbjct: 55 PAPEPEAAPAAPAADAGGYAAAASAGGGSY 84
>AC024765-6|AAF60526.2| 254|Caenorhabditis elegans Smn (survival of
motor neuron)protein interactor protein 1, isoform a
protein.
Length = 254
Score = 28.3 bits (60), Expect = 4.3
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +2
Query: 20 GTKNVAGPAVYYPPGHTPFAKKDAPLVTSAGYQ 118
GTKNV A P +P AKK + S GYQ
Sbjct: 40 GTKNVVRIAQKSPDSTSPEAKKQKQWLESVGYQ 72
>Z81568-3|CAB04592.1| 643|Caenorhabditis elegans Hypothetical
protein K08E3.4 protein.
Length = 643
Score = 27.9 bits (59), Expect = 5.7
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Frame = -2
Query: 231 IGTAVFFSECFSFMREPDSYS-YMPRPEAYAPPPCIALDWYPADVTKGASFLAKGVCPGG 55
+GT E + + EPD S Y P+P AY P P + + P + S+ A P
Sbjct: 413 VGTTSPPREPVNRLTEPDEPSTYTPKPIAYEPEPMV---YKPEAMKPAVSYDAYEEPPA- 468
Query: 54 *YTAGPATFLVP 19
P TFL P
Sbjct: 469 --EPAPPTFLAP 478
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,174,766
Number of Sequences: 27780
Number of extensions: 209949
Number of successful extensions: 703
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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