Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0936.Seq
         (592 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   3.0  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   3.9  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   6.8  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   6.8  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    21   6.8  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    21   6.8  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    21   6.8  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    21   6.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   6.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.0  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 270 HDNTRLAQHSGRQIGTAV 217
           HDN R+A   GRQ G  +
Sbjct: 353 HDNHRVASRFGRQRGDEI 370


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 320 NINRYISMHFRVNTVIYMITQGW 252
           N   Y    F +NT++Y +  GW
Sbjct: 144 NFKAYCLFSF-LNTIVYCVPAGW 165


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 323 RLLENSHNTTPTNDRKKWNPKNNN 394
           +++ +  N T  N+  K+N  NNN
Sbjct: 79  KIISSLSNNTIHNNNYKYNYNNNN 102


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 323 RLLENSHNTTPTNDRKKWNPKNNN 394
           +++ +  N T  N+  K+N  NNN
Sbjct: 79  KIISSLSNNTIHNNNYKYNYNNNN 102


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 323 RLLENSHNTTPTNDRKKWNPKNNN 394
           +++ +  N T  N+  K+N  NNN
Sbjct: 80  KIISSLSNNTIHNNNYKYNYNNNN 103


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 323 RLLENSHNTTPTNDRKKWNPKNNN 394
           +++ +  N T  N+  K+N  NNN
Sbjct: 80  KIISSLSNNTIHNNNYKYNYNNNN 103


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 323 RLLENSHNTTPTNDRKKWNPKNNN 394
           +++ +  N T  N+  K+N  NNN
Sbjct: 80  KIISSLSNNTIHNNNYKYNYNNNN 103


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 323 RLLENSHNTTPTNDRKKWNPKNNN 394
           +++ +  N T  N+  K+N  NNN
Sbjct: 80  KIISSLSNNTIHNNNYKYNYNNNN 103


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 86  PSWRRACVPGGSTRRARPRS 27
           PS++ A  PG S++   P S
Sbjct: 885 PSYKPASTPGCSSKNGEPTS 904


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 335 NSHNTTPTNDRKKWNPKNNN 394
           NS+N+T T      N  NNN
Sbjct: 222 NSNNSTITAGNANTNASNNN 241


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,893
Number of Sequences: 438
Number of extensions: 2725
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)