Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0935.Seq
(707 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 33 0.030
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom... 32 0.092
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 31 0.12
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 31 0.21
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces... 30 0.37
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 29 0.49
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 28 1.1
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 28 1.1
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 28 1.5
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 28 1.5
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 27 2.0
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 27 3.5
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch... 27 3.5
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c... 27 3.5
SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyce... 27 3.5
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch... 26 4.6
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 4.6
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 4.6
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ... 26 6.1
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 26 6.1
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 26 6.1
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos... 26 6.1
SPBC16G5.11c |bag101|bag1-a, bag1|BAG family molecular chaperone... 26 6.1
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 26 6.1
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 25 8.0
>SPBC6B1.04 |mde4||monopolin-like complex subunit
Mde4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 33.5 bits (73), Expect = 0.030
Identities = 20/86 (23%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Frame = +3
Query: 33 KNKTTKMDAIKKKMQAMKLEKDNALDRAAMCEQQAKDAN---LRAEKAEEEARQLQKKIQ 203
K T + + K + +K ++ L+ + EQ+ +AN L+ E+ E + ++I
Sbjct: 54 KQSATDSELLHKNLDEIKFLQNEKLNNEKLLEQEQNEANDYRLKVERLEHKISDYVQEIN 113
Query: 204 TIENELDQTQESLMQVNESSKRRRRL 281
++ ++L Q Q+S + +E + + RL
Sbjct: 114 SLNSQL-QIQKSNPEKHEDAVSQNRL 138
>SPBC947.12 |kms2||spindle pole body protein
Kms2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 31.9 bits (69), Expect = 0.092
Identities = 15/75 (20%), Positives = 38/75 (50%)
Frame = +3
Query: 33 KNKTTKMDAIKKKMQAMKLEKDNALDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIE 212
++K ++ + + + E D++ + C QAK + +A ++++ ++QTI
Sbjct: 185 RSKDEQVKELNARNAKLLEELDSSEEACKSCYTQAKTWEKKFREALRDSKEYAAQLQTIH 244
Query: 213 NELDQTQESLMQVNE 257
E +Q Q ++++ E
Sbjct: 245 EEYEQQQAHIVRMEE 259
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 31.5 bits (68), Expect = 0.12
Identities = 17/81 (20%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +3
Query: 39 KTTKMDAIKKKMQAMKLEKDNALDRAAMCEQ-QAKDANLRAEKAEEEARQLQKKIQTIEN 215
KT ++ +K+ KL + L++ + Q ++ E E+E ++L+ K+Q
Sbjct: 1321 KTASLNLMKEYNSRWKLRFQSVLNKYERVDPTQLEELKKNCEALEKEKQELETKLQETAK 1380
Query: 216 ELDQTQESLMQVNESSKRRRR 278
E D ++ + +NE + ++
Sbjct: 1381 ETDTFKQQVNSLNEEVENLKK 1401
Score = 28.3 bits (60), Expect = 1.1
Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Frame = +3
Query: 93 KDNALDRAAMCEQQAKDAN--LRAEKAEEEARQLQKKIQTIENELDQTQES 239
K ++L R A +Q+ + N L ++ AE EA +QK+I+++++ Q QES
Sbjct: 1425 KKSSLTRFAHLKQELTNKNKELTSKNAENEA--MQKEIESLKDSNHQLQES 1473
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/57 (24%), Positives = 29/57 (50%)
Frame = +3
Query: 87 LEKDNALDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIENELDQTQESLMQVNE 257
LEKD + + QQ ++NLR + E +++K+ + + ++ S Q++E
Sbjct: 243 LEKDALQRKVSSLSQQFTESNLRYQNIVAELSEMRKQYEFSQVSFEKEISSQKQISE 299
Score = 27.1 bits (57), Expect = 2.6
Identities = 16/71 (22%), Positives = 33/71 (46%)
Frame = +3
Query: 57 AIKKKMQAMKLEKDNALDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIENELDQTQE 236
A+ ++ Q + A R E KD + E+E + L +++Q + +ELD +
Sbjct: 463 AMSEQYQKSLEDCQKAKSRYEQLETLFKDKCTENKHYEQETKDLARQVQVLLHELDLCEN 522
Query: 237 SLMQVNESSKR 269
++ +S K+
Sbjct: 523 GIVLGVDSRKK 533
Score = 26.6 bits (56), Expect = 3.5
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +3
Query: 126 EQQAKDANLRAEKAEEEARQLQKKIQTIENELDQTQESLMQVNES 260
EQQ +++ + ++ E L+ + + +ENEL Q +E L + + S
Sbjct: 63 EQQLRNSEKKLLQSNERYDLLEDERKLLENELSQIKEYLREKSSS 107
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/61 (24%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +3
Query: 75 QAMKLEKDNALDRAAMCEQQAKDANLRAEKAEEEARQLQK-KIQTIENELDQTQESLMQV 251
+++ LEK N L+++ + +++KD + K+ +E +K ++Q + ++L L Q
Sbjct: 718 RSLALEKLNDLEKSLVLSERSKDELDESYKSLQEQLASKKIEVQNVSSQLSICNSQLEQS 777
Query: 252 N 254
N
Sbjct: 778 N 778
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 30.7 bits (66), Expect = 0.21
Identities = 19/82 (23%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Frame = +3
Query: 33 KNKTTKMDAIKKKMQAMKLEKDN-----ALDRAAMCEQQAKDANL--RAEKAEEEARQLQ 191
KN +++++ K K +++ E++ A R+++ + N+ + + +E R+L+
Sbjct: 590 KNLESELNSSKIKNESLLNERNLLKEMLATSRSSILSHNSSAGNIDDKMKSIDESTRELE 649
Query: 192 KKIQTIENELDQTQESLMQVNE 257
K + NE+ QESL + N+
Sbjct: 650 KNYEVYRNEMTAIQESLSKRNQ 671
>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 29.9 bits (64), Expect = 0.37
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Frame = +3
Query: 63 KKKMQAMKLEKDNALDRAAMCEQQAKDANLRAEKAE---EEARQLQKKIQTIENELDQ 227
++K ++ K+E+ + R E Q+K NLR + E ++ R LQ+KI +E +L Q
Sbjct: 17 QQKRKSKKMEELLSKQREECKELQSKITNLRKQLKEGNKKQKRALQQKISQMEADLSQ 74
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 29.5 bits (63), Expect = 0.49
Identities = 21/98 (21%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Frame = +3
Query: 24 GS*KNKTTKMDAIKKKMQAMKLEKDNALDRAAMCEQQAKDANLRAEKAEEEA--RQLQKK 197
G+ + + + ++ Q ++EK++ E+ +D + +E ++EEA ++L+++
Sbjct: 18 GNKMRELLEKEHLRMTQQNAEIEKEDEEYNIEEEEEAERDIEISSESSDEEAELKKLEEE 77
Query: 198 IQTIENELDQTQESLMQVNESSKRRRRLCRTLSPKWLP 311
+ +E L + +E + + R L RTL P P
Sbjct: 78 GEEVEKIL-RDEERIKKRKIQKNRAANLQRTLQPPKRP 114
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 28.3 bits (60), Expect = 1.1
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +2
Query: 395 ASQAADESERARKVLENRSLADEERMDALENQLKEARFSLRRPTRNTMRLLV 550
AS AD+S A + AD+E + +EN+ RF R+ +R+LV
Sbjct: 242 ASAQADKSIEAAANAVPSTPADDENNEEVENRSTTRRFDETESFRHALRILV 293
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 28.3 bits (60), Expect = 1.1
Identities = 17/79 (21%), Positives = 38/79 (48%)
Frame = +3
Query: 42 TTKMDAIKKKMQAMKLEKDNALDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIENEL 221
T ++ ++ ++ ++ EKD+ + + +D + + E E RQLQ ++ + EL
Sbjct: 248 TERIRFLENALEKVQREKDS------LSTEMEEDKSNKEVDYEYEIRQLQNRLDELSEEL 301
Query: 222 DQTQESLMQVNESSKRRRR 278
D Q+ L + + +R
Sbjct: 302 DVAQDLLTEKEDEIATLKR 320
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 27.9 bits (59), Expect = 1.5
Identities = 20/48 (41%), Positives = 23/48 (47%)
Frame = -1
Query: 482 RGRPCAPHPPTTCSRAPYVRARIHRRPGWPRTAWRWRSRDAPRISRGP 339
R R +P P SR+PY R RR PR +R RSR SR P
Sbjct: 112 RLRSRSPSPHEARSRSPYNDERSDRRSMSPR--YRSRSRSPDGRSRSP 157
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/62 (20%), Positives = 33/62 (53%)
Frame = +3
Query: 48 KMDAIKKKMQAMKLEKDNALDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIENELDQ 227
K++ + ++ +KLE+ NA + KD + + + +EE + +I ++E ++D+
Sbjct: 3323 KLEPLNSEVDRLKLEQKNAEECIQETIAACKDLDEKLLQLQEEYASMISEIHSMELQMDE 3382
Query: 228 TQ 233
+
Sbjct: 3383 VK 3384
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/68 (20%), Positives = 32/68 (47%)
Frame = +3
Query: 54 DAIKKKMQAMKLEKDNALDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIENELDQTQ 233
+A+ ++ ++++ + + ++ AEK EE Q+K+ + ELD T+
Sbjct: 620 EALDLSVKERSIQEEKLNESLKTSKTNLEEQTQLAEKYHEELLDNQQKLYDLRIELDYTK 679
Query: 234 ESLMQVNE 257
+ Q+ E
Sbjct: 680 SNCKQMEE 687
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = -3
Query: 660 QVVTNDTELFLKFNDFGFARLGTLLGALQVSL 565
+VVT +T LFL F D + LLG LQ+ L
Sbjct: 429 EVVTYETSLFLNFLDEKVSAELLLLGTLQLPL 460
>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 775
Score = 26.6 bits (56), Expect = 3.5
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Frame = +3
Query: 54 DAIKKKMQAMKLEKDNALDRAAMCEQQAKDANLRAEKAEEEARQLQ---KKIQTIENELD 224
D I + + KD+ALD + E + K + + RQ Q +++ + +L
Sbjct: 618 DDISESLMQNSKRKDSALDTNQLFELELKKFDPLRNRLHASYRQQQLLLNEMRNVTQKLK 677
Query: 225 QTQESL--MQV-NESSKRRRRLCRTL 293
Q E L M+V N + + LC L
Sbjct: 678 QNPEFLRKMEVYNNQFSKNKELCSNL 703
>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +3
Query: 156 AEKAEEEARQLQKKIQTIENELDQTQESLMQVNESSKRRRR 278
A + + +L+KK + +E + T +S ++ + SK+R R
Sbjct: 338 ASQVRKPVGKLEKKFENLEKSIGDTLKSSIRSSPKSKKRSR 378
>SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 210
Score = 26.6 bits (56), Expect = 3.5
Identities = 16/73 (21%), Positives = 40/73 (54%), Gaps = 8/73 (10%)
Frame = +3
Query: 63 KKKMQAMKLEKDNALDRAAMCEQQAKDANLRAEKAEEEARQLQ--------KKIQTIENE 218
+ ++Q ++ + N +++AAM + K+ + +E ARQL+ +KI+ +++E
Sbjct: 76 ESQLQQLQQQSFN-MEQAAMTTESLKNTMATVQTMQETARQLKSQSKNVSIEKIEKLQDE 134
Query: 219 LDQTQESLMQVNE 257
+ ++ ++NE
Sbjct: 135 IQDYMDAAGELNE 147
>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 26.2 bits (55), Expect = 4.6
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -1
Query: 425 RARIHRRPGWPRTAWRWRSRDAPRISRGPPPAVGYVGSGQPLRTQ 291
RAR H RP R + R + + A G PP+ + SG R +
Sbjct: 81 RARQHERPFRSRKSRRRKGKKAFSPRPGSPPSPSFYRSGSQKRAR 125
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.2 bits (55), Expect = 4.6
Identities = 19/75 (25%), Positives = 26/75 (34%)
Frame = -1
Query: 497 PSADSRGRPCAPHPPTTCSRAPYVRARIHRRPGWPRTAWRWRSRDAPRISRGPPPAVGYV 318
P DS P + +AP + P P RD P R P G +
Sbjct: 479 PPKDSSSTSTQPTEQSNAQQAPSPKEEERPLPSEPSQNQPAEYRDTPDTPRNIMPLPGLM 538
Query: 317 GSGQPLRTQRSAEPS 273
+ QP++ EPS
Sbjct: 539 SADQPIKV---TEPS 550
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.2 bits (55), Expect = 4.6
Identities = 13/76 (17%), Positives = 33/76 (43%)
Frame = +3
Query: 39 KTTKMDAIKKKMQAMKLEKDNALDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIENE 218
+ ++ D +K + + ++ + KD+ + EEE +L++ +TI ++
Sbjct: 327 RISEFDNLKSERDTLSIKNEKLEKLLRNTIGSLKDSRTSNSQLEEEMVELKESNRTIHSQ 386
Query: 219 LDQTQESLMQVNESSK 266
L + L + +K
Sbjct: 387 LTDAESKLSSFEQENK 402
>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 266
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/57 (22%), Positives = 29/57 (50%)
Frame = +3
Query: 45 TKMDAIKKKMQAMKLEKDNALDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIEN 215
TK A KKK + K +K+N + ++ + ++++ + L +K++ +EN
Sbjct: 32 TKPPASKKKRKNRKKKKNNGPSEQFVGNNDLEEQRSGSIDSKDKEKPLDEKVKELEN 88
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 254 RKLEEKEKALQNAESEVAALNRRIQ 328
+ L+EK K L+NA ++ L RRIQ
Sbjct: 77 KPLDEKVKELENANKTLSDLVRRIQ 101
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 25.8 bits (54), Expect = 6.1
Identities = 20/89 (22%), Positives = 35/89 (39%)
Frame = +3
Query: 39 KTTKMDAIKKKMQAMKLEKDNALDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIENE 218
K KM KK+Q EK + A EQ ++ + EEE+ + Q EN+
Sbjct: 492 KLEKMGGWMKKLQDENSEKTETI---AQLEQIIEELHEELRSLEEESIKESSATQQNENQ 548
Query: 219 LDQTQESLMQVNESSKRRRRLCRTLSPKW 305
++ L+ ++ + + T W
Sbjct: 549 HKRSSRKLLYEDKQAIQEAHTINTKRKLW 577
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.8 bits (54), Expect = 6.1
Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Frame = +3
Query: 36 NKTTKMDAIKKKMQAMKLEKDNALDRAAMCEQQAKD---ANLRAEKAEEEARQLQKKIQT 206
N T K + + K D ++ +C++QA+ +L + + E+ + + K Q
Sbjct: 452 NATRKKNGVYLAESTYKELMDRVQNKDLLCQEQARKLEVLDLNVKSSREQLQYVSKSNQE 511
Query: 207 IENELDQTQESLMQVNESSK 266
+ E++ Q L VN S++
Sbjct: 512 HKKEVEALQ--LQLVNSSTE 529
>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 980
Score = 25.8 bits (54), Expect = 6.1
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +3
Query: 84 KLEKDNALDRAAMCEQQAKDANLRAEKAEEEAR--QLQKK 197
K EK+ +R + + A L A+KA+EEAR +L KK
Sbjct: 25 KTEKELERERQKAAKLEKYHAKLAAKKAKEEARKPKLDKK 64
>SPBC16G5.11c |bag101|bag1-a, bag1|BAG family molecular chaperone
regulator|Schizosaccharomyces pombe|chr 2|||Manual
Length = 195
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 150 LRAEKAEEEARQLQKKIQTIENELDQTQESL 242
L +EK E +QL KIQ + + +DQT + +
Sbjct: 163 LGSEKLRFERKQLVSKIQKMLDHVDQTSQEV 193
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +3
Query: 63 KKKMQAMKLEKDNALDRAAMCEQQAKDANLRAEKAEEEARQ 185
KK A K KDN +A + QQ ++ NL+ + +++++
Sbjct: 181 KKSSDAWKERKDNE-KKAMLMRQQRREENLKKRRESKKSKK 220
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 25.4 bits (53), Expect = 8.0
Identities = 17/74 (22%), Positives = 36/74 (48%)
Frame = +3
Query: 39 KTTKMDAIKKKMQAMKLEKDNALDRAAMCEQQAKDANLRAEKAEEEARQLQKKIQTIENE 218
K+ K D KKK A + EK + + EQ+A+ E+ E R +++++++ ++
Sbjct: 15 KSRKQDEEKKKKDAEEDEKWSKGVKTNKKEQEAEKRKAALERKAERERLEKEEMESLPSK 74
Query: 219 LDQTQESLMQVNES 260
+ + + N S
Sbjct: 75 GGKGSKKAAKKNSS 88
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.133 0.383
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,185,618
Number of Sequences: 5004
Number of extensions: 38202
Number of successful extensions: 239
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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