Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0934.Seq
         (755 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0416 - 3194578-3194862                                           31   1.3  
01_01_0702 + 5423059-5423571                                           29   5.3  
07_03_1295 + 25580090-25580986                                         28   9.2  

>03_01_0416 - 3194578-3194862
          Length = 94

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 82 RWLCGTCSSATR*SATRLPRS 20
          RWLCG CS A R  A +L R+
Sbjct: 32 RWLCGLCSEAVRDEAAKLGRN 52


>01_01_0702 + 5423059-5423571
          Length = 170

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -2

Query: 142 ECILVSIESGRTRASFRREPRWLCGTCSSATR*SATRLP 26
           EC    I  G  RA+F  +  WLCG CS A + +A R P
Sbjct: 39  ECTAAYI--GGVRAAFCGD--WLCGLCSEAVKETARRDP 73


>07_03_1295 + 25580090-25580986
          Length = 298

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 118 SGRTRASFRREPRWLCGTCSSATR*SATRL 29
           SG TR + R+ P WLC    S  R  AT +
Sbjct: 262 SGGTRLAARKLPSWLCAVGRSGGRSQATAM 291


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,310,083
Number of Sequences: 37544
Number of extensions: 350905
Number of successful extensions: 708
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)