Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0933.Seq
         (524 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    30   0.24 
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    28   0.74 
SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase |Schizosaccharom...    26   4.0  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    26   4.0  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    25   6.9  

>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 16/61 (26%), Positives = 26/61 (42%)
 Frame = -1

Query: 200 PPCKMFIHMSTASLYVMSIRVYPGFNRIRKNTRFIPPRTSMALWNLFISNALISNPFAPL 21
           PPC   +  ST   +V       GF R  +        T+ A+ NL +   + +NP  P+
Sbjct: 72  PPCTSMMGFSTNYQFVCKHCTEDGFERFERGVSAWKAITATAMANLVVKRYVETNPDVPV 131

Query: 20  N 18
           +
Sbjct: 132 D 132


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 28.3 bits (60), Expect = 0.74
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -3

Query: 219 HFXXXXXSVQNVHPYVYCLSVCNVYSSVSWFQ*NQEEHALHSAE 88
           HF      ++ +    Y L VCN   ++SWF   ++   LH  E
Sbjct: 216 HFNLQLQLLRVIFLSTYSLVVCNSEMAISWFNCMKKTRYLHDQE 259


>SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
 Frame = +1

Query: 70  HKAIEVLG----GMKRVFFLILLKPGYTRIDITYREAVDIWMNIL 192
           H+AI+ L     G+K + F    K G+T  ++  R+ +DI+ +++
Sbjct: 72  HEAIQSLKRNKVGLKGILFTPFEKGGHTSFNVALRKELDIYASLV 116


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -1

Query: 161 LYVMSIRVYPGFNRIRKNTRFIPPRTSMALWNLFISNALISN 36
           L +MS+RV+    +   NT+   P T+  L+N F+ +  I+N
Sbjct: 338 LVIMSLRVFILVIQEFCNTKSSHPETAQVLYNSFLVDNRINN 379


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 119 IRKNTRFIPPRTSMALWN 66
           I  N   +PPR S +LWN
Sbjct: 856 ITHNASHVPPRPSKSLWN 873


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,111,191
Number of Sequences: 5004
Number of extensions: 41813
Number of successful extensions: 100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)