Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0933.Seq
         (524 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0416 - 3194578-3194862                                           31   0.75 
01_01_0702 + 5423059-5423571                                           29   3.0  
07_03_1295 + 25580090-25580986                                         28   5.3  
08_02_1620 - 28288152-28288353,28288469-28288557,28288634-282888...    27   9.2  

>03_01_0416 - 3194578-3194862
          Length = 94

 Score = 30.7 bits (66), Expect = 0.75
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 82 RWLCGTCSSATR*SATRLPRS 20
          RWLCG CS A R  A +L R+
Sbjct: 32 RWLCGLCSEAVRDEAAKLGRN 52


>01_01_0702 + 5423059-5423571
          Length = 170

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -2

Query: 142 ECILVSIESGRTRASFRREPRWLCGTCSSATR*SATRLP 26
           EC    I  G  RA+F  +  WLCG CS A + +A R P
Sbjct: 39  ECTAAYI--GGVRAAFCGD--WLCGLCSEAVKETARRDP 73


>07_03_1295 + 25580090-25580986
          Length = 298

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 118 SGRTRASFRREPRWLCGTCSSATR*SATRL 29
           SG TR + R+ P WLC    S  R  AT +
Sbjct: 262 SGGTRLAARKLPSWLCAVGRSGGRSQATAM 291


>08_02_1620 -
           28288152-28288353,28288469-28288557,28288634-28288828,
           28289082-28289423,28290227-28291672,28292590-28292666,
           28293160-28294509,28295921-28296029,28296896-28297007,
           28297800-28297957
          Length = 1359

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 9   QREIERGKRVADQRVADEQVPQSHRGSRRNEARV 110
           Q+++   +++  Q+ +  QVPQ H G+  NE +V
Sbjct: 879 QQQLPAQQQLQKQQQSQMQVPQHHSGNDANELKV 912


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,435,618
Number of Sequences: 37544
Number of extensions: 227424
Number of successful extensions: 527
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)