Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0932.Seq
(713 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0568 + 18837195-18837203,18837694-18837741,18837853-188379... 58 7e-09
03_05_0776 + 27625122-27625415,27627226-27627273,27627455-276275... 44 1e-04
03_02_0919 - 12392471-12392636,12392740-12392931,12393366-123934... 44 1e-04
03_01_0081 + 645214-645228,645791-645856,645973-646142,646265-64... 44 1e-04
07_01_0453 + 3420727-3420800,3421666-3421792,3422348-3422431,342... 41 8e-04
06_03_0921 + 25949453-25949986,25950150-25950188,25950380-259504... 31 0.91
02_01_0622 - 4658133-4658150,4658269-4658337,4658436-4658462,465... 31 1.2
07_03_1737 + 29137654-29137842,29137999-29138061,29138196-291382... 29 4.8
02_05_1356 + 35894170-35894397,35894475-35894663,35894768-35895319 29 4.8
08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,440... 28 8.5
01_06_0450 + 29472531-29472838,29472998-29473092,29473195-294732... 28 8.5
01_01_0813 - 6327086-6327262,6327342-6327440,6327516-6327608,632... 28 8.5
>10_08_0568 + 18837195-18837203,18837694-18837741,18837853-18837912,
18837986-18838155,18838297-18838369,18838529-18838594,
18838685-18838768,18838950-18839027,18839122-18839205,
18839562-18839641,18839791-18839848,18839933-18840235,
18840361-18840531,18840972-18841204,18841303-18841705,
18841961-18842212,18842293-18842790,18843073-18843170,
18843314-18843413,18843653-18843798,18843912-18844068
Length = 1056
Score = 58.0 bits (134), Expect = 7e-09
Identities = 51/196 (26%), Positives = 85/196 (43%), Gaps = 8/196 (4%)
Frame = -2
Query: 601 INWDMKRLEGYRNFCNKLWNASRFVLMNTEGRIAASTAAK*PVAGGPLDSGGVQPDHQSV 422
IN D+KR+ GYR +CNKLWNA RF MN G AA + PL + +++V
Sbjct: 728 INLDIKRVHGYRQWCNKLWNAVRFA-MNKLGDQYTPPAAIALCSMPPLCKWILSALNKAV 786
Query: 421 PRSAGQLPLRYRRRHSXXXXXXXXXXXVSRADQAGNERWHRSRTARYSPYA-----GDCT 257
++ + + +A +++S+ A C
Sbjct: 787 GKTVSSMEACKFSEATSSMYSWWQYQLCDVFIEAVKPYFNQSQELESERGACRDTLWICL 846
Query: 256 GGLLRLAHPIIPFITETIWQRV---KVLCGITADTIMLQPFPQYDASQVDEAALADTEWL 86
LRL HP +P+ITE +WQR+ K C D+IM+ +P ++ + E +
Sbjct: 847 DTGLRLLHPFMPYITEELWQRLPQPKEAC--RKDSIMISEYPSVVQEWTNDQVENEMETV 904
Query: 85 KQAIVAVRNIRAEMNI 38
++ +R++R +I
Sbjct: 905 LDSVNKLRSLRPHTDI 920
Score = 39.5 bits (88), Expect = 0.003
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = -3
Query: 462 RWILAEFNQTIKAYREALDSFRFDIAAGILYEFTWNQFCDWYLELTKPVMNGGTEAEL-R 286
+WIL+ N+ + ++++ +F A +Y + Q CD ++E KP N E E R
Sbjct: 776 KWILSALNKAVGKTVSSMEACKFSEATSSMYSWWQYQLCDVFIEAVKPYFNQSQELESER 835
Query: 285 GT-RHTLVTVLE 253
G R TL L+
Sbjct: 836 GACRDTLWICLD 847
>03_05_0776 +
27625122-27625415,27627226-27627273,27627455-27627514,
27627633-27627802,27627901-27627973,27628096-27628161,
27628262-27628345,27628681-27628758,27629009-27629092,
27629835-27630137,27630227-27630397,27630971-27631161,
27631284-27631686,27632246-27632497,27632577-27633077,
27633181-27633278,27633400-27633499,27633722-27633867,
27633973-27634138
Length = 1095
Score = 44.0 bits (99), Expect = 1e-04
Identities = 17/26 (65%), Positives = 21/26 (80%)
Frame = -2
Query: 601 INWDMKRLEGYRNFCNKLWNASRFVL 524
IN D+KR+ GYR +CNKLWNA RF +
Sbjct: 763 INLDIKRVVGYRQWCNKLWNAIRFAM 788
Score = 39.5 bits (88), Expect = 0.003
Identities = 21/78 (26%), Positives = 37/78 (47%)
Frame = -3
Query: 462 RWILAEFNQTIKAYREALDSFRFDIAAGILYEFTWNQFCDWYLELTKPVMNGGTEAELRG 283
+WIL+ N+ I +L++++F A +Y + Q CD ++E KP ++ E
Sbjct: 811 KWILSVLNKAIGKTVTSLEAYKFSDATSAIYSWWQYQLCDVFIEAIKPYFFNDSQ-EFES 869
Query: 282 TRHTLVTVLEVCCASRIR 229
R L VC + +R
Sbjct: 870 ARAASRDALWVCLDTGLR 887
Score = 37.5 bits (83), Expect = 0.010
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = -2
Query: 262 CTGGLLRLAHPIIPFITETIWQRV-KVLCGITADTIMLQPFPQYDASQVDEAALADTEWL 86
C LRL HP +P++TE +WQR+ + D+IM+ +P D+ + +
Sbjct: 881 CLDTGLRLLHPFMPYVTEELWQRLPQPKDSCRKDSIMVSEYPSVVKEWTDDKLENEIDIA 940
Query: 85 KQAIVAVRNIR 53
I +R+++
Sbjct: 941 LDTINKLRSLK 951
>03_02_0919 -
12392471-12392636,12392740-12392931,12393366-12393463,
12393719-12394219,12394287-12394532,12395627-12396029,
12396155-12396348,12396755-12396925,12397064-12397366,
12397463-12397520,12397678-12397757,12398910-12398987,
12399530-12399613,12399692-12399757,12399908-12399980,
12400080-12400249,12400368-12400427,12400632-12400679,
12401217-12401255,12401364-12401372
Length = 1012
Score = 44.0 bits (99), Expect = 1e-04
Identities = 17/26 (65%), Positives = 21/26 (80%)
Frame = -2
Query: 601 INWDMKRLEGYRNFCNKLWNASRFVL 524
IN D+KR+ GYR +CNKLWNA RF +
Sbjct: 698 INLDIKRVVGYRQWCNKLWNAIRFAM 723
Score = 36.7 bits (81), Expect = 0.018
Identities = 20/78 (25%), Positives = 35/78 (44%)
Frame = -3
Query: 462 RWILAEFNQTIKAYREALDSFRFDIAAGILYEFTWNQFCDWYLELTKPVMNGGTEAELRG 283
+WIL+ N+ +L++++F A +Y + Q CD ++E KP + E
Sbjct: 746 KWILSALNKATGKTVTSLEAYKFSDATSAIYSWWQYQLCDVFIEAIKPYFFNEPQ-EFES 804
Query: 282 TRHTLVTVLEVCCASRIR 229
R L VC + +R
Sbjct: 805 ARVASRDTLWVCLETGLR 822
Score = 35.5 bits (78), Expect = 0.042
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -2
Query: 247 LRLAHPIIPFITETIWQRV-KVLCGITADTIMLQPFP 140
LRL HP +P+ITE +WQ + + D+IM+ +P
Sbjct: 821 LRLLHPFMPYITEELWQHLPQPKYSCRQDSIMISEYP 857
>03_01_0081 +
645214-645228,645791-645856,645973-646142,646265-646319,
646434-646499,646604-646687,647091-647168,647425-647508,
648000-648302,648402-648572,649098-649288,649406-649808,
650368-650619,650696-651196,651306-651403,651810-651911,
652016-652178
Length = 933
Score = 44.0 bits (99), Expect = 1e-04
Identities = 17/26 (65%), Positives = 21/26 (80%)
Frame = -2
Query: 601 INWDMKRLEGYRNFCNKLWNASRFVL 524
IN D+KR+ GYR +CNKLWNA RF +
Sbjct: 650 INLDIKRVVGYRQWCNKLWNAIRFAM 675
Score = 41.1 bits (92), Expect = 8e-04
Identities = 22/78 (28%), Positives = 38/78 (48%)
Frame = -3
Query: 462 RWILAEFNQTIKAYREALDSFRFDIAAGILYEFTWNQFCDWYLELTKPVMNGGTEAELRG 283
+WIL+ N+ I +L++++F A +Y + Q CD ++E KP ++ EL
Sbjct: 698 KWILSVLNKAIGKSVTSLEAYKFSDATSAIYSWWQYQLCDVFIEAIKPYFFNDSQ-ELES 756
Query: 282 TRHTLVTVLEVCCASRIR 229
R L VC + +R
Sbjct: 757 ARAASRDALWVCLDTGLR 774
Score = 35.1 bits (77), Expect = 0.056
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -2
Query: 262 CTGGLLRLAHPIIPFITETIWQRV-KVLCGITADTIMLQPFPQYDASQVDE 113
C LRL HP +P +TE +WQR+ + D+IM+ +P D+
Sbjct: 768 CLDTGLRLLHPFMPCVTEELWQRLPQPKDSCQKDSIMVSEYPSLVKEWADD 818
>07_01_0453 +
3420727-3420800,3421666-3421792,3422348-3422431,
3422550-3422644,3423063-3423154,3423326-3423379,
3424221-3424273,3424472-3424539,3424777-3424852,
3425159-3425242,3425793-3425941,3426375-3426492,
3426583-3426699,3426950-3427170,3427503-3427536,
3427585-3427685,3427832-3427943,3428379-3428504,
3428579-3428716,3428808-3428858,3428938-3429050,
3430253-3430318,3430582-3430729,3430826-3430930,
3431017-3431118,3431495-3431567,3431647-3431813,
3431906-3432028
Length = 956
Score = 41.1 bits (92), Expect = 8e-04
Identities = 17/44 (38%), Positives = 27/44 (61%)
Frame = -2
Query: 625 ALASTGRDINWDMKRLEGYRNFCNKLWNASRFVLMNTEGRIAAS 494
++ + G+D+N +RL + F NKLWNA +F+L N R A+
Sbjct: 589 SMGTAGQDLNLSTERLTSNKAFTNKLWNAGKFLLQNLPDRSDAT 632
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = -3
Query: 477 LSLADRWILAEFNQTIKAYREALDSFRFDIAAGILYEFTWNQFCDWYLELTK-PVMNGGT 301
L L + W++ ++ I + D F F AA +Y+F W F DW + V+ GT
Sbjct: 651 LPLPESWVVTGLHELIDRVSTSYDKFFFGDAAREIYDFFWGDFADWSSRTVRLLVVFVGT 710
Query: 300 EAELRGTRH 274
A G R+
Sbjct: 711 RANSLGARY 719
Score = 38.7 bits (86), Expect = 0.005
Identities = 20/71 (28%), Positives = 39/71 (54%)
Frame = -2
Query: 250 LLRLAHPIIPFITETIWQRVKVLCGITADTIMLQPFPQYDASQVDEAALADTEWLKQAIV 71
+L+L HP +PF+TE +WQ + I++ +P D + + ++ + L+ I
Sbjct: 750 ILKLLHPFMPFVTEELWQALP----YRKQAIIVAHWPATDLPK-NSLSIKRFQNLQSLIR 804
Query: 70 AVRNIRAEMNI 38
+RN+RAE ++
Sbjct: 805 GIRNVRAEYSV 815
>06_03_0921 +
25949453-25949986,25950150-25950188,25950380-25950445,
25950526-25950669,25951416-25951612,25952281-25952443,
25952760-25952873,25953304-25953401,25953964-25954042,
25954356-25954514,25954690-25954779,25955790-25955923,
25956513-25956672,25956826-25956909,25957000-25957167,
25957321-25957446,25958088-25958225,25958311-25958414,
25958832-25958895,25959229-25959317,25959393-25959534,
25959937-25960000,25960085-25960152,25960399-25960521,
25960604-25960669,25960857-25960962,25961076-25961167,
25961243-25961344
Length = 1170
Score = 31.1 bits (67), Expect = 0.91
Identities = 19/64 (29%), Positives = 27/64 (42%)
Frame = -2
Query: 232 PIIPFITETIWQRVKVLCGITADTIMLQPFPQYDASQVDEAALADTEWLKQAIVAVRNIR 53
P PF TET++Q ++ + D+I FP + DE + I RNIR
Sbjct: 796 PFTPFFTETLYQNLRKVSTKPEDSIHFCSFPS-TTGERDERVEQSVNRMMTIIDLARNIR 854
Query: 52 AEMN 41
N
Sbjct: 855 ERHN 858
>02_01_0622 -
4658133-4658150,4658269-4658337,4658436-4658462,
4658808-4658873,4658954-4659076,4659562-4659629,
4659703-4659766,4659994-4660135,4660218-4660306,
4660574-4660637,4660870-4661021,4661124-4661261,
4661742-4661867,4661971-4662183,4662343-4662426,
4662583-4662742,4662993-4663126,4664047-4664136,
4664313-4664471,4665528-4665611,4666170-4666289,
4666338-4666391,4666899-4666945,4667556-4667598,
4667730-4668586,4668845-4668899
Length = 1081
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/64 (26%), Positives = 27/64 (42%)
Frame = -2
Query: 232 PIIPFITETIWQRVKVLCGITADTIMLQPFPQYDASQVDEAALADTEWLKQAIVAVRNIR 53
P PF TE ++Q ++ + + +I FP Q+DE + + RNIR
Sbjct: 753 PFTPFFTEVLYQNLRKVSSKSEKSIHFCNFPS-STGQIDERVEHSVNRMMTIVDLARNIR 811
Query: 52 AEMN 41
N
Sbjct: 812 ERHN 815
>07_03_1737 +
29137654-29137842,29137999-29138061,29138196-29138267,
29138411-29138518,29138615-29138695,29138818-29138871,
29138956-29139081,29139162-29139251,29139444-29139566,
29139667-29139777,29139927-29140040,29140214-29140270,
29140350-29140424,29140526-29140600
Length = 445
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 185 YFHTLPDGFGDERNDRMREAQQTSSTVTSVWRV 283
YFH + D FGD ++EA + T+ + + +
Sbjct: 290 YFHDVYDAFGDSEEKHVKEAMEEQPTLMNAFEL 322
>02_05_1356 + 35894170-35894397,35894475-35894663,35894768-35895319
Length = 322
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -1
Query: 677 FPNGIEPHGTDAALHPGGAGVYR 609
F N I+P G D ALHP A R
Sbjct: 207 FQNRIQPQGVDPALHPSFAATLR 229
>08_01_0004 +
39265-39440,39545-39652,41955-43528,43650-43996,
44090-44322,45308-45412,45531-45705,46443-46658
Length = 977
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +1
Query: 427 FDGLVELRQNPAVRQRQVISPPLKPQSYLLCSSAQSGWRSTACYRSY 567
F+ + EL + V Q+ P K Q+ LC + W S A Y Y
Sbjct: 811 FEKIKELVSSVNVSGHQIFGDPEKLQNVKLCDLHPASWFSVAWYPVY 857
>01_06_0450 +
29472531-29472838,29472998-29473092,29473195-29473262,
29473347-29473390,29473467-29473544,29473657-29473810,
29474290-29474376,29474653-29474805,29474890-29475000,
29475211-29475276,29475364-29475543
Length = 447
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -1
Query: 404 ASASISPQAFCMSSPGTSSVTGI 336
+S + + A+C+S PGTS +TG+
Sbjct: 243 SSPTTNKNAYCLSRPGTSYLTGL 265
>01_01_0813 -
6327086-6327262,6327342-6327440,6327516-6327608,
6327695-6327898,6327988-6328109,6329606-6329738,
6330232-6330270,6332308-6332412
Length = 323
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Frame = +2
Query: 140 RERLQHDGVGSDTAKYF---HTLPDG--FGDERNDRMRE 241
R+ L+HDGV D A +F H DG D D+M E
Sbjct: 229 RKELEHDGVEVDRATFFDECHKTKDGRYVNDATQDKMNE 267
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,543,225
Number of Sequences: 37544
Number of extensions: 459983
Number of successful extensions: 1535
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1534
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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