Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0932.Seq
         (713 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY391746-1|AAR28996.1|  502|Anopheles gambiae putative GPCR prot...    25   2.4  
AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript...    25   3.1  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    24   5.4  
AY725820-1|AAU50568.1|  593|Anopheles gambiae fruitless female-s...    23   9.5  
AY725819-1|AAU50567.1|  569|Anopheles gambiae fruitless male-spe...    23   9.5  

>AY391746-1|AAR28996.1|  502|Anopheles gambiae putative GPCR
           protein.
          Length = 502

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 305 APKQNCAVLAIRW*LYWRSAAPRASDHSVHHR 210
           AP  +  ++   + L WR A    +D SVH++
Sbjct: 56  APTVSVLLMTTSYGLLWRGATANRNDSSVHYQ 87


>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1022

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -1

Query: 479 TCRWRTAGFWRSSTRPSKRTAKRWTASASISPQAF 375
           TCRWR   +W S     +R +K   A++ ++ +A+
Sbjct: 271 TCRWRGVYWWTSVIADLRRKSK---AASRVAQRAY 302


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 23.8 bits (49), Expect = 5.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 167 GSDTAKYFHTLPDGFG 214
           G+D+AKY   LPD  G
Sbjct: 557 GADSAKYVSALPDEIG 572


>AY725820-1|AAU50568.1|  593|Anopheles gambiae fruitless
           female-specific zinc-fingerC isoform protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 9.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 52  HGCYVPQRSPVSAIRCR 102
           H  + P R P +A RCR
Sbjct: 514 HNMFTPSREPGTAWRCR 530


>AY725819-1|AAU50567.1|  569|Anopheles gambiae fruitless
           male-specific zinc-fingerC isoform protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 9.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 52  HGCYVPQRSPVSAIRCR 102
           H  + P R P +A RCR
Sbjct: 490 HNMFTPSREPGTAWRCR 506


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 749,052
Number of Sequences: 2352
Number of extensions: 15133
Number of successful extensions: 22
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 73177125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)