Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0932.Seq
(713 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical ... 50 2e-06
U53155-2|AAC48266.2| 918|Caenorhabditis elegans Valyl trna synt... 47 1e-05
Z70310-5|CAA94369.1| 1141|Caenorhabditis elegans Hypothetical pr... 42 3e-04
Z69360-4|CAC42291.2| 732|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z69360-3|CAA93286.2| 369|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z69360-2|CAA93285.2| 780|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z77660-5|CAB01173.1| 284|Caenorhabditis elegans Hypothetical pr... 29 3.3
AL110485-14|CAB60362.1| 109|Caenorhabditis elegans Hypothetical... 29 4.4
>AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical
protein Y87G2A.5 protein.
Length = 1050
Score = 50.0 bits (114), Expect = 2e-06
Identities = 26/79 (32%), Positives = 38/79 (48%)
Frame = -3
Query: 465 DRWILAEFNQTIKAYREALDSFRFDIAAGILYEFTWNQFCDWYLELTKPVMNGGTEAELR 286
D WIL+ + +K EAL ++ F A + Y F FCD Y+E KPV+ G
Sbjct: 765 DLWILSRLAKAVKETNEALKAYNFTQATTVTYNFWLYDFCDVYVETIKPVLYGDNTT--- 821
Query: 285 GTRHTLVTVLEVCCASRIR 229
R ++VL C + +R
Sbjct: 822 -LRQVAISVLHKCIDTGLR 839
Score = 48.8 bits (111), Expect = 4e-06
Identities = 20/31 (64%), Positives = 22/31 (70%)
Frame = -2
Query: 616 STGRDINWDMKRLEGYRNFCNKLWNASRFVL 524
S GRDIN D+ R+ GYR FCNKLW RF L
Sbjct: 711 SQGRDINLDVLRVHGYRKFCNKLWQVVRFAL 741
Score = 40.7 bits (91), Expect = 0.001
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Frame = -2
Query: 262 CTGGLLRLAHPIIPFITETIWQRVKVL--CGITADTIMLQPFP---QYDASQVDEAALAD 98
C LRL P++PFI+E +WQR+ L T+ +I++ +P +Y+ Q +E A
Sbjct: 833 CIDTGLRLISPLMPFISEELWQRMPRLDDSDYTSPSIIVAQYPLTQKYEKYQ-NEKLEAA 891
Query: 97 TEWLKQAIVAVRNIRAEMNI 38
E+ ++ I VR++RA+ ++
Sbjct: 892 FEFAQELIGKVRSLRADYDL 911
>U53155-2|AAC48266.2| 918|Caenorhabditis elegans Valyl trna
synthetase protein 1 protein.
Length = 918
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/73 (31%), Positives = 35/73 (47%)
Frame = -3
Query: 471 LADRWILAEFNQTIKAYREALDSFRFDIAAGILYEFTWNQFCDWYLELTKPVMNGGTEAE 292
L D WI+A + T+ ++ F +A L++F + CD YLE TK + A
Sbjct: 629 LVDEWIMARLSTTVSTVDAHMNKFSLHLALSTLHKFITSDICDIYLESTKKALWNNDIAR 688
Query: 291 LRGTRHTLVTVLE 253
+R R L VL+
Sbjct: 689 IREARSILQRVLQ 701
>Z70310-5|CAA94369.1| 1141|Caenorhabditis elegans Hypothetical
protein R11A8.6 protein.
Length = 1141
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/66 (31%), Positives = 33/66 (50%)
Frame = -2
Query: 250 LLRLAHPIIPFITETIWQRVKVLCGITADTIMLQPFPQYDASQVDEAALADTEWLKQAIV 71
++RL P PF E IW +K + G T +++ P+ D S +DE E ++ I
Sbjct: 764 IVRLMAPFTPFFCEYIWLNLKKVIGSTEESVHFLMLPKPDESLIDETVERRVEVMRNVID 823
Query: 70 AVRNIR 53
VR +R
Sbjct: 824 LVRLVR 829
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = -3
Query: 474 SLADRWILAEFNQTIKAYREALDSFRFDIAAGILYEFTWNQFCDWYLELTKPVMNG 307
++ DRWI + N + R+ +DS+R G L +F ++ + Y+ L + + G
Sbjct: 689 NVMDRWIESFTNSLVAFVRKEMDSYRLYAVVGPLTKF-FDTLTNIYIRLNRKRVKG 743
>Z69360-4|CAC42291.2| 732|Caenorhabditis elegans Hypothetical
protein F25H8.5c protein.
Length = 732
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 231 GCARRSRPPVQSPAYGEYRAVLLRCHRSLPA 323
GC +RS P Q P E+RA ++ CH + PA
Sbjct: 231 GCRQRSPQP-QYPRTNEFRAPVVECHGNGPA 260
>Z69360-3|CAA93286.2| 369|Caenorhabditis elegans Hypothetical
protein F25H8.5b protein.
Length = 369
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 231 GCARRSRPPVQSPAYGEYRAVLLRCHRSLPA 323
GC +RS P Q P E+RA ++ CH + PA
Sbjct: 231 GCRQRSPQP-QYPRTNEFRAPVVECHGNGPA 260
>Z69360-2|CAA93285.2| 780|Caenorhabditis elegans Hypothetical
protein F25H8.5a protein.
Length = 780
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 231 GCARRSRPPVQSPAYGEYRAVLLRCHRSLPA 323
GC +RS P Q P E+RA ++ CH + PA
Sbjct: 231 GCRQRSPQP-QYPRTNEFRAPVVECHGNGPA 260
>Z77660-5|CAB01173.1| 284|Caenorhabditis elegans Hypothetical
protein F38H4.5 protein.
Length = 284
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 135 YCGNGCSMMVSAVIPQSTFTRCQ 203
+CGNG +++VS V P+S CQ
Sbjct: 135 WCGNGMNILVSGVGPRSDVQACQ 157
>AL110485-14|CAB60362.1| 109|Caenorhabditis elegans Hypothetical
protein Y46G5A.20 protein.
Length = 109
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +2
Query: 185 YFHTLPDGFGDERNDRMREAQQTSSTVTSVWRVPRSSASVPPFITGLVSSRYQSQNWFQV 364
YF D F R R + +SS+ +S S++S G +S+RYQ+QN +
Sbjct: 22 YFKLCQDSF-PRHAPRRRSSSSSSSSSSSTSSSSSSNSSESDDQVGQLSTRYQNQNLSES 80
Query: 365 NS 370
+S
Sbjct: 81 SS 82
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,984,240
Number of Sequences: 27780
Number of extensions: 331559
Number of successful extensions: 1123
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1123
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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